Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL8A1P27658 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL8A1P27658 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC14.9□□□□□ -0.02
COL8A1P27658 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC14.9□□□□□ -0.02
COL8A1P27658 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC14.9□□□□□ -0.02
COL8A1P27658 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC14.9□□□□□ -0.02
COL8A1P27658 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
COL8A1P27658 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
COL8A1P27658 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL8A1P27658 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC14.9□□□□□ -0.02
COL8A1P27658 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC14.9□□□□□ -0.02
COL8A1P27658 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC14.9□□□□□ -0.02
COL8A1P27658 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL8A1P27658 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL8A1P27658 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL8A1P27658 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC14.9□□□□□ -0.02
COL8A1P27658 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL8A1P27658 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC14.9□□□□□ -0.02
COL8A1P27658 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL8A1P27658 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL8A1P27658 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
COL8A1P27658 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
COL8A1P27658 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
COL8A1P27658 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL8A1P27658 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
COL8A1P27658 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
COL8A1P27658 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC14.89□□□□□ -0.03
COL8A1P27658 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL8A1P27658 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL8A1P27658 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC14.89□□□□□ -0.03
COL8A1P27658 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
COL8A1P27658 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL8A1P27658 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL8A1P27658 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL8A1P27658 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL8A1P27658 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL8A1P27658 CALY-202ENST00000368555 783 ntTSL 2 BASIC14.89□□□□□ -0.03
COL8A1P27658 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC14.89□□□□□ -0.03
COL8A1P27658 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC14.89□□□□□ -0.03
COL8A1P27658 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL8A1P27658 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC14.89□□□□□ -0.03
COL8A1P27658 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC14.89□□□□□ -0.03
COL8A1P27658 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
COL8A1P27658 AC092658.1-201ENST00000505836 891 ntBASIC14.89□□□□□ -0.03
COL8A1P27658 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC14.89□□□□□ -0.03
COL8A1P27658 GATD1-206ENST00000526325 756 ntTSL 5 BASIC14.89□□□□□ -0.03
COL8A1P27658 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC14.89□□□□□ -0.03
COL8A1P27658 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC14.89□□□□□ -0.03
COL8A1P27658 IGHV3-72-202ENST00000621503 303 ntBASIC14.89□□□□□ -0.03
COL8A1P27658 LETM1P2-201ENST00000597330 2178 ntBASIC14.89□□□□□ -0.03
COL8A1P27658 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
COL8A1P27658 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC14.89□□□□□ -0.03
COL8A1P27658 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL8A1P27658 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
COL8A1P27658 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC14.89□□□□□ -0.03
COL8A1P27658 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC14.89□□□□□ -0.03
COL8A1P27658 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC14.89□□□□□ -0.03
COL8A1P27658 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL8A1P27658 AC022144.1-201ENST00000602255 1580 ntBASIC14.89□□□□□ -0.03
COL8A1P27658 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC14.89□□□□□ -0.03
COL8A1P27658 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL8A1P27658 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC14.88□□□□□ -0.03
COL8A1P27658 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL8A1P27658 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
COL8A1P27658 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL8A1P27658 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
COL8A1P27658 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
COL8A1P27658 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL8A1P27658 AL138781.2-201ENST00000617896 1843 ntBASIC14.88□□□□□ -0.03
COL8A1P27658 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
COL8A1P27658 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
COL8A1P27658 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL8A1P27658 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
COL8A1P27658 MXI1-205ENST00000393134 889 ntTSL 2 BASIC14.88□□□□□ -0.03
COL8A1P27658 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC14.88□□□□□ -0.03
COL8A1P27658 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC14.88□□□□□ -0.03
COL8A1P27658 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
COL8A1P27658 TSSK5P-201ENST00000423978 907 ntBASIC14.88□□□□□ -0.03
COL8A1P27658 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
COL8A1P27658 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
COL8A1P27658 ACA64.2-201ENST00000459014 129 ntBASIC14.88□□□□□ -0.03
COL8A1P27658 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC14.88□□□□□ -0.03
COL8A1P27658 PARP8-218ENST00000513738 596 ntTSL 4 BASIC14.88□□□□□ -0.03
COL8A1P27658 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC14.88□□□□□ -0.03
COL8A1P27658 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC14.88□□□□□ -0.03
COL8A1P27658 ALG1L8P-201ENST00000533887 760 ntBASIC14.88□□□□□ -0.03
COL8A1P27658 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL8A1P27658 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
COL8A1P27658 TP53TG3HP-202ENST00000569755 579 ntBASIC14.88□□□□□ -0.03
COL8A1P27658 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL8A1P27658 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC14.88□□□□□ -0.03
COL8A1P27658 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC14.88□□□□□ -0.03
COL8A1P27658 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL8A1P27658 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL8A1P27658 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL8A1P27658 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC14.88□□□□□ -0.03
COL8A1P27658 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL8A1P27658 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL8A1P27658 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL8A1P27658 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC14.88□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms