Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
MSH3P20585 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
MSH3P20585 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
MSH3P20585 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
MSH3P20585 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
MSH3P20585 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC17.04■□□□□ 0.32
MSH3P20585 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
MSH3P20585 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC17.04■□□□□ 0.32
MSH3P20585 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
MSH3P20585 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
MSH3P20585 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
MSH3P20585 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
MSH3P20585 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
MSH3P20585 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
MSH3P20585 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC17.04■□□□□ 0.32
MSH3P20585 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
MSH3P20585 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
MSH3P20585 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC17.04■□□□□ 0.32
MSH3P20585 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
MSH3P20585 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
MSH3P20585 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
MSH3P20585 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC17.04■□□□□ 0.32
MSH3P20585 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC17.04■□□□□ 0.32
MSH3P20585 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
MSH3P20585 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC17.04■□□□□ 0.32
MSH3P20585 ARTN-206ENST00000472435 402 ntTSL 3 BASIC17.04■□□□□ 0.32
MSH3P20585 PENK-208ENST00000523051 772 ntTSL 5 BASIC17.04■□□□□ 0.32
MSH3P20585 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC17.04■□□□□ 0.32
MSH3P20585 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC17.04■□□□□ 0.32
MSH3P20585 AC105339.3-201ENST00000560043 636 ntBASIC17.04■□□□□ 0.32
MSH3P20585 PRKN-208ENST00000610470 531 ntTSL 2 BASIC17.04■□□□□ 0.32
MSH3P20585 PRKN-209ENST00000612485 225 ntTSL 5 BASIC17.04■□□□□ 0.32
MSH3P20585 MIR1199-201ENST00000621445 119 ntBASIC17.04■□□□□ 0.32
MSH3P20585 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
MSH3P20585 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC17.04■□□□□ 0.32
MSH3P20585 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
MSH3P20585 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
MSH3P20585 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
MSH3P20585 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
MSH3P20585 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
MSH3P20585 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC17.04■□□□□ 0.32
MSH3P20585 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
MSH3P20585 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
MSH3P20585 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
MSH3P20585 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
MSH3P20585 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
MSH3P20585 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC17.04■□□□□ 0.32
MSH3P20585 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
MSH3P20585 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC17.04■□□□□ 0.32
MSH3P20585 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC17.04■□□□□ 0.32
MSH3P20585 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC17.03■□□□□ 0.32
MSH3P20585 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC17.03■□□□□ 0.32
MSH3P20585 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
MSH3P20585 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
MSH3P20585 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
MSH3P20585 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
MSH3P20585 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC17.03■□□□□ 0.32
MSH3P20585 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
MSH3P20585 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC17.03■□□□□ 0.32
MSH3P20585 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC17.03■□□□□ 0.32
MSH3P20585 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
MSH3P20585 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC17.03■□□□□ 0.32
MSH3P20585 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
MSH3P20585 CYGB-205ENST00000590175 830 ntTSL 3 BASIC17.03■□□□□ 0.32
MSH3P20585 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC17.03■□□□□ 0.32
MSH3P20585 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC17.03■□□□□ 0.32
MSH3P20585 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC17.03■□□□□ 0.32
MSH3P20585 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC17.03■□□□□ 0.32
MSH3P20585 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
MSH3P20585 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
MSH3P20585 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC17.03■□□□□ 0.32
MSH3P20585 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
MSH3P20585 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
MSH3P20585 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
MSH3P20585 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
MSH3P20585 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
MSH3P20585 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
MSH3P20585 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
MSH3P20585 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC17.02■□□□□ 0.32
MSH3P20585 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC17.02■□□□□ 0.32
MSH3P20585 EGFEM1P-202ENST00000431685 1563 ntBASIC17.02■□□□□ 0.32
MSH3P20585 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC17.02■□□□□ 0.32
MSH3P20585 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
MSH3P20585 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
MSH3P20585 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
MSH3P20585 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC17.02■□□□□ 0.32
MSH3P20585 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
MSH3P20585 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
MSH3P20585 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
MSH3P20585 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
MSH3P20585 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC17.02■□□□□ 0.32
MSH3P20585 AC079776.4-201ENST00000511039 504 ntBASIC17.02■□□□□ 0.32
MSH3P20585 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
MSH3P20585 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC17.02■□□□□ 0.32
MSH3P20585 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC17.02■□□□□ 0.32
MSH3P20585 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
MSH3P20585 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC17.02■□□□□ 0.32
MSH3P20585 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC17.02■□□□□ 0.32
MSH3P20585 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
MSH3P20585 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms