Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC19.73■□□□□ 0.75
LIG1P18858 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC19.73■□□□□ 0.75
LIG1P18858 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
LIG1P18858 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC19.73■□□□□ 0.75
LIG1P18858 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC19.73■□□□□ 0.75
LIG1P18858 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIG1P18858 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIG1P18858 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIG1P18858 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC19.73■□□□□ 0.75
LIG1P18858 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIG1P18858 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC19.73■□□□□ 0.75
LIG1P18858 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC19.73■□□□□ 0.75
LIG1P18858 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIG1P18858 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC19.73■□□□□ 0.75
LIG1P18858 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
LIG1P18858 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC19.73■□□□□ 0.75
LIG1P18858 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
LIG1P18858 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC19.73■□□□□ 0.75
LIG1P18858 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
LIG1P18858 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIG1P18858 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
LIG1P18858 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC19.72■□□□□ 0.75
LIG1P18858 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC19.72■□□□□ 0.75
LIG1P18858 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIG1P18858 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC19.72■□□□□ 0.75
LIG1P18858 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC19.72■□□□□ 0.75
LIG1P18858 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIG1P18858 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIG1P18858 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
LIG1P18858 IGHV3-47-201ENST00000425060 335 ntBASIC19.72■□□□□ 0.75
LIG1P18858 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIG1P18858 AC096582.2-201ENST00000510860 516 ntBASIC19.72■□□□□ 0.75
LIG1P18858 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC19.72■□□□□ 0.75
LIG1P18858 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC19.72■□□□□ 0.75
LIG1P18858 AL121894.2-201ENST00000602977 491 ntBASIC19.72■□□□□ 0.75
LIG1P18858 AL049757.1-201ENST00000616842 1596 ntBASIC19.72■□□□□ 0.75
LIG1P18858 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIG1P18858 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIG1P18858 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIG1P18858 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC19.72■□□□□ 0.75
LIG1P18858 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIG1P18858 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC19.72■□□□□ 0.75
LIG1P18858 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIG1P18858 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIG1P18858 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
LIG1P18858 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
LIG1P18858 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIG1P18858 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
LIG1P18858 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
LIG1P18858 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
LIG1P18858 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIG1P18858 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC19.72■□□□□ 0.75
LIG1P18858 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
LIG1P18858 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
LIG1P18858 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC19.72■□□□□ 0.75
LIG1P18858 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC19.72■□□□□ 0.75
LIG1P18858 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIG1P18858 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIG1P18858 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIG1P18858 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
LIG1P18858 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIG1P18858 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIG1P18858 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC19.71■□□□□ 0.75
LIG1P18858 STX3-203ENST00000529177 1571 ntTSL 2 BASIC19.71■□□□□ 0.75
LIG1P18858 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
LIG1P18858 AC006449.5-201ENST00000610658 2098 ntBASIC19.71■□□□□ 0.75
LIG1P18858 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIG1P18858 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
LIG1P18858 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC19.71■□□□□ 0.75
LIG1P18858 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIG1P18858 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIG1P18858 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
LIG1P18858 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
LIG1P18858 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
LIG1P18858 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
LIG1P18858 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
LIG1P18858 AL450487.1-201ENST00000426799 995 ntBASIC19.71■□□□□ 0.75
LIG1P18858 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC19.71■□□□□ 0.75
LIG1P18858 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIG1P18858 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC19.71■□□□□ 0.75
LIG1P18858 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC19.71■□□□□ 0.75
LIG1P18858 AC005336.2-201ENST00000593183 939 ntBASIC19.71■□□□□ 0.75
LIG1P18858 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIG1P18858 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIG1P18858 IRF5-214ENST00000613821 595 ntTSL 5 BASIC19.71■□□□□ 0.75
LIG1P18858 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC19.71■□□□□ 0.75
LIG1P18858 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
LIG1P18858 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
LIG1P18858 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIG1P18858 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC19.71■□□□□ 0.75
LIG1P18858 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC19.71■□□□□ 0.75
LIG1P18858 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIG1P18858 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
LIG1P18858 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIG1P18858 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC19.7■□□□□ 0.74
LIG1P18858 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
LIG1P18858 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC19.7■□□□□ 0.74
LIG1P18858 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC19.7■□□□□ 0.74
LIG1P18858 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
LIG1P18858 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC19.7■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms