Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC10.5□□□□□ -0.73
APOBP04114 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
APOBP04114 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
APOBP04114 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC10.5□□□□□ -0.73
APOBP04114 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
APOBP04114 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC10.5□□□□□ -0.73
APOBP04114 CENPM-206ENST00000407253 818 ntTSL 2 BASIC10.5□□□□□ -0.73
APOBP04114 AC099336.1-201ENST00000417053 1171 ntBASIC10.5□□□□□ -0.73
APOBP04114 ACTBP11-201ENST00000436287 1126 ntBASIC10.5□□□□□ -0.73
APOBP04114 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC10.5□□□□□ -0.73
APOBP04114 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC10.5□□□□□ -0.73
APOBP04114 APOC4-201ENST00000591600 348 ntTSL 3 BASIC10.5□□□□□ -0.73
APOBP04114 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
APOBP04114 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
APOBP04114 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC10.5□□□□□ -0.73
APOBP04114 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC10.5□□□□□ -0.73
APOBP04114 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
APOBP04114 AC093503.3-201ENST00000624917 2352 ntBASIC10.5□□□□□ -0.73
APOBP04114 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
APOBP04114 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
APOBP04114 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC10.5□□□□□ -0.73
APOBP04114 MTND6P24-201ENST00000440466 518 ntBASIC10.5□□□□□ -0.73
APOBP04114 TTTY23B-201ENST00000442790 549 ntBASIC10.5□□□□□ -0.73
APOBP04114 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC10.49□□□□□ -0.73
APOBP04114 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC10.49□□□□□ -0.73
APOBP04114 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC10.49□□□□□ -0.73
APOBP04114 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC10.49□□□□□ -0.73
APOBP04114 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC10.49□□□□□ -0.73
APOBP04114 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC10.49□□□□□ -0.73
APOBP04114 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
APOBP04114 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC10.49□□□□□ -0.73
APOBP04114 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC10.49□□□□□ -0.73
APOBP04114 AC023310.3-201ENST00000557027 670 ntBASIC10.49□□□□□ -0.73
APOBP04114 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC10.49□□□□□ -0.73
APOBP04114 AC100756.1-201ENST00000562736 682 ntBASIC10.49□□□□□ -0.73
APOBP04114 AC138749.3-201ENST00000567691 622 ntBASIC10.49□□□□□ -0.73
APOBP04114 AC116165.1-201ENST00000611806 668 ntBASIC10.49□□□□□ -0.73
APOBP04114 SNX1-214ENST00000625244 324 ntTSL 5 BASIC10.49□□□□□ -0.73
APOBP04114 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
APOBP04114 FRMD8P1-201ENST00000440433 1524 ntBASIC10.49□□□□□ -0.73
APOBP04114 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
APOBP04114 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC10.49□□□□□ -0.73
APOBP04114 MADD-208ENST00000405573 1823 ntTSL 5 BASIC10.49□□□□□ -0.73
APOBP04114 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC10.49□□□□□ -0.73
APOBP04114 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC10.49□□□□□ -0.73
APOBP04114 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC10.49□□□□□ -0.73
APOBP04114 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC10.49□□□□□ -0.73
APOBP04114 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC10.49□□□□□ -0.73
APOBP04114 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
APOBP04114 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
APOBP04114 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC10.49□□□□□ -0.73
APOBP04114 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
APOBP04114 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC10.49□□□□□ -0.73
APOBP04114 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC10.49□□□□□ -0.73
APOBP04114 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
APOBP04114 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
APOBP04114 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC10.49□□□□□ -0.73
APOBP04114 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
APOBP04114 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC10.49□□□□□ -0.73
APOBP04114 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
APOBP04114 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
APOBP04114 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC10.49□□□□□ -0.73
APOBP04114 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC10.49□□□□□ -0.73
APOBP04114 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
APOBP04114 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC10.49□□□□□ -0.73
APOBP04114 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
APOBP04114 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC10.49□□□□□ -0.73
APOBP04114 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC10.49□□□□□ -0.73
APOBP04114 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC10.49□□□□□ -0.73
APOBP04114 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC10.48□□□□□ -0.73
APOBP04114 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC10.48□□□□□ -0.73
APOBP04114 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
APOBP04114 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC10.48□□□□□ -0.73
APOBP04114 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC10.48□□□□□ -0.73
APOBP04114 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC10.48□□□□□ -0.73
APOBP04114 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC10.48□□□□□ -0.73
APOBP04114 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC10.48□□□□□ -0.73
APOBP04114 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC10.48□□□□□ -0.73
APOBP04114 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
APOBP04114 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC10.48□□□□□ -0.73
APOBP04114 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
APOBP04114 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC10.48□□□□□ -0.73
APOBP04114 FAM220BP-201ENST00000377689 816 ntBASIC10.48□□□□□ -0.73
APOBP04114 AC092933.1-201ENST00000393644 945 ntBASIC10.48□□□□□ -0.73
APOBP04114 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC10.48□□□□□ -0.73
APOBP04114 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC10.48□□□□□ -0.73
APOBP04114 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
APOBP04114 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC10.48□□□□□ -0.73
APOBP04114 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC10.48□□□□□ -0.73
APOBP04114 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
APOBP04114 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC10.48□□□□□ -0.73
APOBP04114 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC10.48□□□□□ -0.73
APOBP04114 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC10.48□□□□□ -0.73
APOBP04114 KRT8P44-201ENST00000441609 1350 ntBASIC10.48□□□□□ -0.73
APOBP04114 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
APOBP04114 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC10.48□□□□□ -0.73
APOBP04114 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC10.48□□□□□ -0.73
APOBP04114 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC10.48□□□□□ -0.73
APOBP04114 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC10.48□□□□□ -0.73
APOBP04114 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC10.48□□□□□ -0.73
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms