Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
COL2A1P02458 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
COL2A1P02458 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
COL2A1P02458 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
COL2A1P02458 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL2A1P02458 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
COL2A1P02458 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC19.74■□□□□ 0.75
COL2A1P02458 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC19.74■□□□□ 0.75
COL2A1P02458 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC19.74■□□□□ 0.75
COL2A1P02458 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC19.74■□□□□ 0.75
COL2A1P02458 PRYP6-201ENST00000514804 343 ntBASIC19.74■□□□□ 0.75
COL2A1P02458 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC19.74■□□□□ 0.75
COL2A1P02458 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL2A1P02458 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL2A1P02458 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
COL2A1P02458 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL2A1P02458 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL2A1P02458 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
COL2A1P02458 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL2A1P02458 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
COL2A1P02458 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC19.74■□□□□ 0.75
COL2A1P02458 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
COL2A1P02458 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL2A1P02458 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
COL2A1P02458 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL2A1P02458 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC19.74■□□□□ 0.75
COL2A1P02458 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL2A1P02458 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC19.74■□□□□ 0.75
COL2A1P02458 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC19.74■□□□□ 0.75
COL2A1P02458 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL2A1P02458 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
COL2A1P02458 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC19.73■□□□□ 0.75
COL2A1P02458 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
COL2A1P02458 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC19.73■□□□□ 0.75
COL2A1P02458 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC19.73■□□□□ 0.75
COL2A1P02458 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC19.73■□□□□ 0.75
COL2A1P02458 RARRES2P9-201ENST00000565168 469 ntBASIC19.73■□□□□ 0.75
COL2A1P02458 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC19.73■□□□□ 0.75
COL2A1P02458 AC007967.4-201ENST00000614700 386 ntBASIC19.73■□□□□ 0.75
COL2A1P02458 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC19.73■□□□□ 0.75
COL2A1P02458 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL2A1P02458 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL2A1P02458 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC19.73■□□□□ 0.75
COL2A1P02458 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC19.73■□□□□ 0.75
COL2A1P02458 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL2A1P02458 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
COL2A1P02458 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
COL2A1P02458 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL2A1P02458 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
COL2A1P02458 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL2A1P02458 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC19.73■□□□□ 0.75
COL2A1P02458 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL2A1P02458 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL2A1P02458 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL2A1P02458 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC19.73■□□□□ 0.75
COL2A1P02458 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC19.73■□□□□ 0.75
COL2A1P02458 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
COL2A1P02458 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC19.73■□□□□ 0.75
COL2A1P02458 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC19.73■□□□□ 0.75
COL2A1P02458 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC19.73■□□□□ 0.75
COL2A1P02458 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL2A1P02458 FAM207CP-201ENST00000443486 507 ntBASIC19.73■□□□□ 0.75
COL2A1P02458 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC19.73■□□□□ 0.75
COL2A1P02458 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
COL2A1P02458 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
COL2A1P02458 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC19.73■□□□□ 0.75
COL2A1P02458 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC19.73■□□□□ 0.75
COL2A1P02458 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
COL2A1P02458 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
COL2A1P02458 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC19.73■□□□□ 0.75
COL2A1P02458 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC19.73■□□□□ 0.75
COL2A1P02458 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC19.73■□□□□ 0.75
COL2A1P02458 YTHDF3-AS1-201ENST00000603538 718 ntBASIC19.73■□□□□ 0.75
COL2A1P02458 COQ4-205ENST00000609948 956 ntTSL 2 BASIC19.73■□□□□ 0.75
COL2A1P02458 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
COL2A1P02458 NEFHP1-201ENST00000412845 2629 ntBASIC19.72■□□□□ 0.75
COL2A1P02458 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
COL2A1P02458 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL2A1P02458 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC19.72■□□□□ 0.75
COL2A1P02458 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC19.72■□□□□ 0.75
COL2A1P02458 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
COL2A1P02458 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL2A1P02458 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC19.72■□□□□ 0.75
COL2A1P02458 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC19.72■□□□□ 0.75
COL2A1P02458 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
COL2A1P02458 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
COL2A1P02458 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC19.72■□□□□ 0.75
COL2A1P02458 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC19.72■□□□□ 0.75
COL2A1P02458 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL2A1P02458 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL2A1P02458 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL2A1P02458 FAM220BP-201ENST00000377689 816 ntBASIC19.72■□□□□ 0.75
COL2A1P02458 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL2A1P02458 MIR661-201ENST00000384842 89 ntBASIC19.72■□□□□ 0.75
COL2A1P02458 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC19.72■□□□□ 0.75
COL2A1P02458 PNKD-204ENST00000436005 978 ntTSL 5 BASIC19.72■□□□□ 0.75
COL2A1P02458 AL390754.1-201ENST00000619088 582 ntBASIC19.72■□□□□ 0.75
COL2A1P02458 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC19.72■□□□□ 0.75
COL2A1P02458 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL2A1P02458 AC006277.1-201ENST00000624348 1610 ntBASIC19.72■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms