Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
COL1A1P02452 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL1A1P02452 COPE-202ENST00000349893 948 ntTSL 2 BASIC20.4■□□□□ 0.86
COL1A1P02452 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL1A1P02452 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL1A1P02452 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL1A1P02452 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
COL1A1P02452 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC20.4■□□□□ 0.86
COL1A1P02452 PNKD-204ENST00000436005 978 ntTSL 5 BASIC20.4■□□□□ 0.86
COL1A1P02452 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC20.4■□□□□ 0.86
COL1A1P02452 AC124947.2-201ENST00000547118 1133 ntBASIC20.4■□□□□ 0.86
COL1A1P02452 CYP2A7P1-201ENST00000595391 815 ntBASIC20.4■□□□□ 0.86
COL1A1P02452 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
COL1A1P02452 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
COL1A1P02452 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC20.4■□□□□ 0.86
COL1A1P02452 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
COL1A1P02452 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
COL1A1P02452 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC20.4■□□□□ 0.86
COL1A1P02452 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL1A1P02452 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL1A1P02452 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
COL1A1P02452 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
COL1A1P02452 AKAP8P1-201ENST00000434743 1349 ntBASIC20.4■□□□□ 0.86
COL1A1P02452 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC20.4■□□□□ 0.86
COL1A1P02452 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC20.39■□□□□ 0.86
COL1A1P02452 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC20.39■□□□□ 0.86
COL1A1P02452 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
COL1A1P02452 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC20.39■□□□□ 0.86
COL1A1P02452 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL1A1P02452 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC20.39■□□□□ 0.85
COL1A1P02452 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC20.39■□□□□ 0.85
COL1A1P02452 AC244107.1-201ENST00000442033 332 ntBASIC20.39■□□□□ 0.85
COL1A1P02452 TAF8-206ENST00000472818 719 ntTSL 2 BASIC20.39■□□□□ 0.85
COL1A1P02452 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC20.39■□□□□ 0.85
COL1A1P02452 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC20.39■□□□□ 0.85
COL1A1P02452 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
COL1A1P02452 AC016027.1-202ENST00000607927 1699 ntBASIC20.39■□□□□ 0.85
COL1A1P02452 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL1A1P02452 AC108860.2-201ENST00000562760 2183 ntBASIC20.39■□□□□ 0.85
COL1A1P02452 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
COL1A1P02452 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC20.39■□□□□ 0.85
COL1A1P02452 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL1A1P02452 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL1A1P02452 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL1A1P02452 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
COL1A1P02452 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
COL1A1P02452 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
COL1A1P02452 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL1A1P02452 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL1A1P02452 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL1A1P02452 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL1A1P02452 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
COL1A1P02452 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC20.38■□□□□ 0.85
COL1A1P02452 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
COL1A1P02452 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL1A1P02452 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
COL1A1P02452 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
COL1A1P02452 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL1A1P02452 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL1A1P02452 VMA21-202ENST00000370361 693 ntTSL 5 BASIC20.38■□□□□ 0.85
COL1A1P02452 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC20.38■□□□□ 0.85
COL1A1P02452 HNRNPFP1-201ENST00000391730 1133 ntBASIC20.38■□□□□ 0.85
COL1A1P02452 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL1A1P02452 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
COL1A1P02452 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC20.38■□□□□ 0.85
COL1A1P02452 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
COL1A1P02452 LINC01225-203ENST00000563550 1244 ntBASIC20.38■□□□□ 0.85
COL1A1P02452 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC20.38■□□□□ 0.85
COL1A1P02452 WT1-AS_2.1-201ENST00000613208 137 ntBASIC20.38■□□□□ 0.85
COL1A1P02452 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL1A1P02452 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC20.38■□□□□ 0.85
COL1A1P02452 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC20.38■□□□□ 0.85
COL1A1P02452 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL1A1P02452 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC20.38■□□□□ 0.85
COL1A1P02452 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL1A1P02452 AC139713.2-201ENST00000641328 2723 ntBASIC20.38■□□□□ 0.85
COL1A1P02452 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL1A1P02452 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC20.38■□□□□ 0.85
COL1A1P02452 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC20.38■□□□□ 0.85
COL1A1P02452 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
COL1A1P02452 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC20.38■□□□□ 0.85
COL1A1P02452 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL1A1P02452 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
COL1A1P02452 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
COL1A1P02452 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
COL1A1P02452 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL1A1P02452 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
COL1A1P02452 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC20.37■□□□□ 0.85
COL1A1P02452 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL1A1P02452 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC20.37■□□□□ 0.85
COL1A1P02452 AL592309.1-201ENST00000443127 649 ntBASIC20.37■□□□□ 0.85
COL1A1P02452 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL1A1P02452 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC20.37■□□□□ 0.85
COL1A1P02452 YTHDF3-AS1-201ENST00000603538 718 ntBASIC20.37■□□□□ 0.85
COL1A1P02452 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC20.37■□□□□ 0.85
COL1A1P02452 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC20.37■□□□□ 0.85
COL1A1P02452 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL1A1P02452 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
COL1A1P02452 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL1A1P02452 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms