Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 MFAP1P1-201ENST00000442257 1255 ntBASIC17.13■□□□□ 0.33
SHOX2O60902 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC17.13■□□□□ 0.33
SHOX2O60902 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC17.13■□□□□ 0.33
SHOX2O60902 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC17.13■□□□□ 0.33
SHOX2O60902 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC17.13■□□□□ 0.33
SHOX2O60902 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC17.13■□□□□ 0.33
SHOX2O60902 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC17.13■□□□□ 0.33
SHOX2O60902 AC026748.1-201ENST00000624349 3251 ntBASIC17.13■□□□□ 0.33
SHOX2O60902 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
SHOX2O60902 AC006486.2-201ENST00000624246 2199 ntBASIC17.13■□□□□ 0.33
SHOX2O60902 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
SHOX2O60902 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC17.13■□□□□ 0.33
SHOX2O60902 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC17.13■□□□□ 0.33
SHOX2O60902 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SHOX2O60902 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
SHOX2O60902 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC17.13■□□□□ 0.33
SHOX2O60902 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC17.13■□□□□ 0.33
SHOX2O60902 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
SHOX2O60902 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC17.13■□□□□ 0.33
SHOX2O60902 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SHOX2O60902 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC17.12■□□□□ 0.33
SHOX2O60902 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
SHOX2O60902 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SHOX2O60902 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC17.12■□□□□ 0.33
SHOX2O60902 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SHOX2O60902 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SHOX2O60902 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC17.12■□□□□ 0.33
SHOX2O60902 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
SHOX2O60902 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
SHOX2O60902 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC17.12■□□□□ 0.33
SHOX2O60902 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
SHOX2O60902 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC17.12■□□□□ 0.33
SHOX2O60902 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC17.12■□□□□ 0.33
SHOX2O60902 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC17.12■□□□□ 0.33
SHOX2O60902 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
SHOX2O60902 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SHOX2O60902 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SHOX2O60902 SRP19-202ENST00000445150 833 ntTSL 2 BASIC17.12■□□□□ 0.33
SHOX2O60902 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC17.12■□□□□ 0.33
SHOX2O60902 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC17.12■□□□□ 0.33
SHOX2O60902 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SHOX2O60902 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC17.12■□□□□ 0.33
SHOX2O60902 TUBB8P12-201ENST00000308911 1335 ntBASIC17.12■□□□□ 0.33
SHOX2O60902 TUBB7P-202ENST00000428444 1305 ntBASIC17.12■□□□□ 0.33
SHOX2O60902 TUBB8P7-204ENST00000567960 1332 ntBASIC17.12■□□□□ 0.33
SHOX2O60902 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SHOX2O60902 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC17.12■□□□□ 0.33
SHOX2O60902 SP100-205ENST00000409824 1802 ntTSL 5 BASIC17.12■□□□□ 0.33
SHOX2O60902 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
SHOX2O60902 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
SHOX2O60902 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SHOX2O60902 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC17.12■□□□□ 0.33
SHOX2O60902 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SHOX2O60902 CASK-202ENST00000378158 3848 ntTSL 5 BASIC17.11■□□□□ 0.33
SHOX2O60902 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
SHOX2O60902 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SHOX2O60902 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SHOX2O60902 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SHOX2O60902 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
SHOX2O60902 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SHOX2O60902 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SHOX2O60902 CICP24-201ENST00000605464 2705 ntBASIC17.11■□□□□ 0.33
SHOX2O60902 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
SHOX2O60902 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
SHOX2O60902 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SHOX2O60902 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SHOX2O60902 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SHOX2O60902 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
SHOX2O60902 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
SHOX2O60902 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SHOX2O60902 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC17.11■□□□□ 0.33
SHOX2O60902 AF186192.3-201ENST00000583427 947 ntBASIC17.11■□□□□ 0.33
SHOX2O60902 TMED1-207ENST00000591695 809 ntTSL 5 BASIC17.11■□□□□ 0.33
SHOX2O60902 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC17.11■□□□□ 0.33
SHOX2O60902 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
SHOX2O60902 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SHOX2O60902 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC17.11■□□□□ 0.33
SHOX2O60902 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC17.11■□□□□ 0.33
SHOX2O60902 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SHOX2O60902 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SHOX2O60902 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SHOX2O60902 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
SHOX2O60902 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SHOX2O60902 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SHOX2O60902 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC17.11■□□□□ 0.33
SHOX2O60902 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC17.1■□□□□ 0.33
SHOX2O60902 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC17.1■□□□□ 0.33
SHOX2O60902 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SHOX2O60902 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC17.1■□□□□ 0.33
SHOX2O60902 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC17.1■□□□□ 0.33
SHOX2O60902 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SHOX2O60902 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC17.1■□□□□ 0.33
SHOX2O60902 GGT4P-201ENST00000623672 1708 ntBASIC17.1■□□□□ 0.33
SHOX2O60902 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SHOX2O60902 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
SHOX2O60902 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
SHOX2O60902 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SHOX2O60902 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
SHOX2O60902 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC17.1■□□□□ 0.33
SHOX2O60902 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms