Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
VPS35Q96QK1 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
VPS35Q96QK1 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
VPS35Q96QK1 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
VPS35Q96QK1 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VPS35Q96QK1 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC17.01■□□□□ 0.31
VPS35Q96QK1 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC17.01■□□□□ 0.31
VPS35Q96QK1 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
VPS35Q96QK1 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
VPS35Q96QK1 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VPS35Q96QK1 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC17.01■□□□□ 0.31
VPS35Q96QK1 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC17.01■□□□□ 0.31
VPS35Q96QK1 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC17.01■□□□□ 0.31
VPS35Q96QK1 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VPS35Q96QK1 AC139713.2-201ENST00000641328 2723 ntBASIC17.01■□□□□ 0.31
VPS35Q96QK1 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VPS35Q96QK1 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
VPS35Q96QK1 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VPS35Q96QK1 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
VPS35Q96QK1 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VPS35Q96QK1 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC17.01■□□□□ 0.31
VPS35Q96QK1 AL590627.1-203ENST00000421194 1026 ntBASIC17.01■□□□□ 0.31
VPS35Q96QK1 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC17.01■□□□□ 0.31
VPS35Q96QK1 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC17.01■□□□□ 0.31
VPS35Q96QK1 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
VPS35Q96QK1 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VPS35Q96QK1 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC17.01■□□□□ 0.31
VPS35Q96QK1 GGTLC5P-201ENST00000617623 998 ntBASIC17.01■□□□□ 0.31
VPS35Q96QK1 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC17.01■□□□□ 0.31
VPS35Q96QK1 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VPS35Q96QK1 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VPS35Q96QK1 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
VPS35Q96QK1 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
VPS35Q96QK1 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
VPS35Q96QK1 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VPS35Q96QK1 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC17.01■□□□□ 0.31
VPS35Q96QK1 LINC02012-201ENST00000608206 1725 ntBASIC17.01■□□□□ 0.31
VPS35Q96QK1 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
VPS35Q96QK1 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VPS35Q96QK1 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VPS35Q96QK1 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VPS35Q96QK1 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC17■□□□□ 0.31
VPS35Q96QK1 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VPS35Q96QK1 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VPS35Q96QK1 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VPS35Q96QK1 RHBDF1P1-201ENST00000427504 1941 ntBASIC17■□□□□ 0.31
VPS35Q96QK1 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
VPS35Q96QK1 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VPS35Q96QK1 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VPS35Q96QK1 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
VPS35Q96QK1 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC17■□□□□ 0.31
VPS35Q96QK1 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC17■□□□□ 0.31
VPS35Q96QK1 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC17■□□□□ 0.31
VPS35Q96QK1 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
VPS35Q96QK1 PAWRP1-201ENST00000451083 565 ntBASIC17■□□□□ 0.31
VPS35Q96QK1 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
VPS35Q96QK1 CIPC-205ENST00000555437 566 ntTSL 3 BASIC17■□□□□ 0.31
VPS35Q96QK1 AC145285.3-201ENST00000564603 959 ntBASIC17■□□□□ 0.31
VPS35Q96QK1 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VPS35Q96QK1 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VPS35Q96QK1 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VPS35Q96QK1 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VPS35Q96QK1 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC17■□□□□ 0.31
VPS35Q96QK1 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VPS35Q96QK1 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VPS35Q96QK1 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC17■□□□□ 0.31
VPS35Q96QK1 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VPS35Q96QK1 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VPS35Q96QK1 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC16.99■□□□□ 0.31
VPS35Q96QK1 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
VPS35Q96QK1 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VPS35Q96QK1 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
VPS35Q96QK1 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC16.99■□□□□ 0.31
VPS35Q96QK1 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC16.99■□□□□ 0.31
VPS35Q96QK1 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC16.99■□□□□ 0.31
VPS35Q96QK1 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC16.99■□□□□ 0.31
VPS35Q96QK1 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC16.99■□□□□ 0.31
VPS35Q96QK1 UNC93B6-202ENST00000528242 690 ntBASIC16.99■□□□□ 0.31
VPS35Q96QK1 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
VPS35Q96QK1 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC16.99■□□□□ 0.31
VPS35Q96QK1 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
VPS35Q96QK1 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VPS35Q96QK1 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC16.99■□□□□ 0.31
VPS35Q96QK1 HNRNPRP1-201ENST00000453465 1695 ntBASIC16.99■□□□□ 0.31
VPS35Q96QK1 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC16.99■□□□□ 0.31
VPS35Q96QK1 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VPS35Q96QK1 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
VPS35Q96QK1 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
VPS35Q96QK1 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
VPS35Q96QK1 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VPS35Q96QK1 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VPS35Q96QK1 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VPS35Q96QK1 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC16.99■□□□□ 0.31
VPS35Q96QK1 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
VPS35Q96QK1 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VPS35Q96QK1 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VPS35Q96QK1 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
VPS35Q96QK1 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
VPS35Q96QK1 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
VPS35Q96QK1 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 53 ms