Protein–RNA interactions for Protein: Q96BQ3

TRIM43, Tripartite motif-containing protein 43, humanhuman

Predicted RBP Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM43Q96BQ3 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM43Q96BQ3 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
TRIM43Q96BQ3 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC18.4■□□□□ 0.54
TRIM43Q96BQ3 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC18.4■□□□□ 0.54
TRIM43Q96BQ3 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC18.4■□□□□ 0.54
TRIM43Q96BQ3 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC18.4■□□□□ 0.54
TRIM43Q96BQ3 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM43Q96BQ3 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM43Q96BQ3 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM43Q96BQ3 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.54
TRIM43Q96BQ3 FLJ13224-201ENST00000313737 1514 ntBASIC18.39■□□□□ 0.54
TRIM43Q96BQ3 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
TRIM43Q96BQ3 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
TRIM43Q96BQ3 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRIM43Q96BQ3 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
TRIM43Q96BQ3 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC18.39■□□□□ 0.53
TRIM43Q96BQ3 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC18.39■□□□□ 0.53
TRIM43Q96BQ3 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC18.39■□□□□ 0.53
TRIM43Q96BQ3 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
TRIM43Q96BQ3 AC073389.1-201ENST00000595595 795 ntBASIC18.39■□□□□ 0.53
TRIM43Q96BQ3 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC18.39■□□□□ 0.53
TRIM43Q96BQ3 LINC01451-201ENST00000623792 534 ntBASIC18.39■□□□□ 0.53
TRIM43Q96BQ3 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
TRIM43Q96BQ3 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRIM43Q96BQ3 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRIM43Q96BQ3 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
TRIM43Q96BQ3 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRIM43Q96BQ3 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
TRIM43Q96BQ3 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC18.39■□□□□ 0.53
TRIM43Q96BQ3 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC18.39■□□□□ 0.53
TRIM43Q96BQ3 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRIM43Q96BQ3 FOXO1B-201ENST00000504678 1527 ntBASIC18.39■□□□□ 0.53
TRIM43Q96BQ3 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC18.38■□□□□ 0.53
TRIM43Q96BQ3 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC18.38■□□□□ 0.53
TRIM43Q96BQ3 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC18.38■□□□□ 0.53
TRIM43Q96BQ3 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM43Q96BQ3 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
TRIM43Q96BQ3 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM43Q96BQ3 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
TRIM43Q96BQ3 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC18.38■□□□□ 0.53
TRIM43Q96BQ3 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
TRIM43Q96BQ3 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC18.38■□□□□ 0.53
TRIM43Q96BQ3 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC18.38■□□□□ 0.53
TRIM43Q96BQ3 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC18.38■□□□□ 0.53
TRIM43Q96BQ3 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC18.38■□□□□ 0.53
TRIM43Q96BQ3 MIR658-201ENST00000385210 100 ntBASIC18.38■□□□□ 0.53
TRIM43Q96BQ3 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC18.38■□□□□ 0.53
TRIM43Q96BQ3 AP006294.1-201ENST00000415407 339 ntBASIC18.38■□□□□ 0.53
TRIM43Q96BQ3 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM43Q96BQ3 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC18.38■□□□□ 0.53
TRIM43Q96BQ3 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM43Q96BQ3 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC18.38■□□□□ 0.53
TRIM43Q96BQ3 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC18.38■□□□□ 0.53
TRIM43Q96BQ3 MNT-208ENST00000575394 606 ntTSL 4 BASIC18.38■□□□□ 0.53
TRIM43Q96BQ3 AC091167.2-201ENST00000579581 588 ntBASIC18.38■□□□□ 0.53
TRIM43Q96BQ3 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC18.38■□□□□ 0.53
TRIM43Q96BQ3 MIR6805-201ENST00000615055 62 ntBASIC18.38■□□□□ 0.53
TRIM43Q96BQ3 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC18.38■□□□□ 0.53
TRIM43Q96BQ3 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
TRIM43Q96BQ3 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
TRIM43Q96BQ3 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
TRIM43Q96BQ3 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
TRIM43Q96BQ3 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM43Q96BQ3 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM43Q96BQ3 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM43Q96BQ3 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM43Q96BQ3 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM43Q96BQ3 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC18.38■□□□□ 0.53
TRIM43Q96BQ3 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM43Q96BQ3 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM43Q96BQ3 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC18.37■□□□□ 0.53
TRIM43Q96BQ3 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM43Q96BQ3 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC18.37■□□□□ 0.53
TRIM43Q96BQ3 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM43Q96BQ3 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
TRIM43Q96BQ3 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
TRIM43Q96BQ3 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM43Q96BQ3 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM43Q96BQ3 LYSMD4-203ENST00000378904 2122 ntBASIC18.37■□□□□ 0.53
TRIM43Q96BQ3 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM43Q96BQ3 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC18.37■□□□□ 0.53
TRIM43Q96BQ3 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM43Q96BQ3 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC18.37■□□□□ 0.53
TRIM43Q96BQ3 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM43Q96BQ3 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM43Q96BQ3 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM43Q96BQ3 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM43Q96BQ3 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM43Q96BQ3 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC18.37■□□□□ 0.53
TRIM43Q96BQ3 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC18.37■□□□□ 0.53
TRIM43Q96BQ3 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC18.37■□□□□ 0.53
TRIM43Q96BQ3 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM43Q96BQ3 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC18.37■□□□□ 0.53
TRIM43Q96BQ3 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM43Q96BQ3 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM43Q96BQ3 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM43Q96BQ3 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
TRIM43Q96BQ3 HARS-204ENST00000438307 1789 ntTSL 2 BASIC18.37■□□□□ 0.53
TRIM43Q96BQ3 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM43Q96BQ3 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms