Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC17.12■□□□□ 0.33
TTC28Q96AY4 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TTC28Q96AY4 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TTC28Q96AY4 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TTC28Q96AY4 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC17.12■□□□□ 0.33
TTC28Q96AY4 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC17.12■□□□□ 0.33
TTC28Q96AY4 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
TTC28Q96AY4 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TTC28Q96AY4 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TTC28Q96AY4 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TTC28Q96AY4 MIR33B-201ENST00000385104 96 ntBASIC17.12■□□□□ 0.33
TTC28Q96AY4 FTH1-202ENST00000526640 786 ntTSL 2 BASIC17.12■□□□□ 0.33
TTC28Q96AY4 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC17.12■□□□□ 0.33
TTC28Q96AY4 AL033527.5-202ENST00000641632 1098 ntBASIC17.12■□□□□ 0.33
TTC28Q96AY4 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
TTC28Q96AY4 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TTC28Q96AY4 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC17.12■□□□□ 0.33
TTC28Q96AY4 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TTC28Q96AY4 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC17.12■□□□□ 0.33
TTC28Q96AY4 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC17.12■□□□□ 0.33
TTC28Q96AY4 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TTC28Q96AY4 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TTC28Q96AY4 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC17.11■□□□□ 0.33
TTC28Q96AY4 AL512361.1-201ENST00000554200 418 ntBASIC17.11■□□□□ 0.33
TTC28Q96AY4 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
TTC28Q96AY4 AC010328.2-201ENST00000597698 1111 ntBASIC17.11■□□□□ 0.33
TTC28Q96AY4 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC17.11■□□□□ 0.33
TTC28Q96AY4 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TTC28Q96AY4 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TTC28Q96AY4 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TTC28Q96AY4 AL161938.1-201ENST00000569833 2180 ntBASIC17.11■□□□□ 0.33
TTC28Q96AY4 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
TTC28Q96AY4 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TTC28Q96AY4 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TTC28Q96AY4 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
TTC28Q96AY4 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
TTC28Q96AY4 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC17.11■□□□□ 0.33
TTC28Q96AY4 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
TTC28Q96AY4 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC17.11■□□□□ 0.33
TTC28Q96AY4 RN7SL560P-201ENST00000577943 264 ntBASIC17.11■□□□□ 0.33
TTC28Q96AY4 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TTC28Q96AY4 FOXO1B-201ENST00000504678 1527 ntBASIC17.11■□□□□ 0.33
TTC28Q96AY4 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC17.1■□□□□ 0.33
TTC28Q96AY4 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC17.1■□□□□ 0.33
TTC28Q96AY4 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
TTC28Q96AY4 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TTC28Q96AY4 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TTC28Q96AY4 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TTC28Q96AY4 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC17.1■□□□□ 0.33
TTC28Q96AY4 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC17.1■□□□□ 0.33
TTC28Q96AY4 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC17.1■□□□□ 0.33
TTC28Q96AY4 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC17.1■□□□□ 0.33
TTC28Q96AY4 AC002558.1-201ENST00000488906 803 ntBASIC17.1■□□□□ 0.33
TTC28Q96AY4 SCARNA20.5-201ENST00000516991 142 ntBASIC17.1■□□□□ 0.33
TTC28Q96AY4 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC17.1■□□□□ 0.33
TTC28Q96AY4 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC17.1■□□□□ 0.33
TTC28Q96AY4 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC17.1■□□□□ 0.33
TTC28Q96AY4 AL031055.1-201ENST00000606362 631 ntBASIC17.1■□□□□ 0.33
TTC28Q96AY4 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC17.1■□□□□ 0.33
TTC28Q96AY4 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC17.1■□□□□ 0.33
TTC28Q96AY4 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TTC28Q96AY4 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TTC28Q96AY4 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC17.1■□□□□ 0.33
TTC28Q96AY4 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TTC28Q96AY4 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TTC28Q96AY4 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TTC28Q96AY4 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TTC28Q96AY4 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TTC28Q96AY4 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC17.1■□□□□ 0.33
TTC28Q96AY4 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
TTC28Q96AY4 AKR7A2P1-201ENST00000460134 915 ntBASIC17.1■□□□□ 0.33
TTC28Q96AY4 AC091167.2-201ENST00000579581 588 ntBASIC17.1■□□□□ 0.33
TTC28Q96AY4 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TTC28Q96AY4 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC17.1■□□□□ 0.33
TTC28Q96AY4 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TTC28Q96AY4 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC17.09■□□□□ 0.33
TTC28Q96AY4 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC17.09■□□□□ 0.33
TTC28Q96AY4 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TTC28Q96AY4 SFT2D2-202ENST00000367829 491 ntTSL 5 BASIC17.09■□□□□ 0.33
TTC28Q96AY4 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
TTC28Q96AY4 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TTC28Q96AY4 PTK2-225ENST00000520892 571 ntTSL 4 BASIC17.09■□□□□ 0.33
TTC28Q96AY4 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
TTC28Q96AY4 AC093484.2-201ENST00000580996 2166 ntBASIC17.09■□□□□ 0.33
TTC28Q96AY4 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
TTC28Q96AY4 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC17.09■□□□□ 0.33
TTC28Q96AY4 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC17.09■□□□□ 0.33
TTC28Q96AY4 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TTC28Q96AY4 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC17.09■□□□□ 0.33
TTC28Q96AY4 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TTC28Q96AY4 LINC00896-202ENST00000609602 2128 ntBASIC17.09■□□□□ 0.33
TTC28Q96AY4 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TTC28Q96AY4 RPS3-201ENST00000278572 907 ntTSL 3 BASIC17.09■□□□□ 0.33
TTC28Q96AY4 MPV17-206ENST00000402722 827 ntTSL 3 BASIC17.09■□□□□ 0.33
TTC28Q96AY4 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC17.09■□□□□ 0.33
TTC28Q96AY4 AC091804.1-201ENST00000486888 567 ntBASIC17.09■□□□□ 0.33
TTC28Q96AY4 SDHAP3-202ENST00000515467 728 ntBASIC17.09■□□□□ 0.33
TTC28Q96AY4 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC17.09■□□□□ 0.33
TTC28Q96AY4 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC17.09■□□□□ 0.33
TTC28Q96AY4 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms