Protein–RNA interactions for Protein: Q7Z3V4

UBE3B, Ubiquitin-protein ligase E3B, humanhuman

Predictions only

Length 1,068 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3BQ7Z3V4 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
UBE3BQ7Z3V4 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
UBE3BQ7Z3V4 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
UBE3BQ7Z3V4 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
UBE3BQ7Z3V4 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
UBE3BQ7Z3V4 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC21.26■□□□□ 0.99
UBE3BQ7Z3V4 CNN2P11-201ENST00000429351 262 ntBASIC21.26■□□□□ 0.99
UBE3BQ7Z3V4 ACTG1P14-201ENST00000446382 1122 ntBASIC21.26■□□□□ 0.99
UBE3BQ7Z3V4 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC21.26■□□□□ 0.99
UBE3BQ7Z3V4 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
UBE3BQ7Z3V4 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC21.26■□□□□ 0.99
UBE3BQ7Z3V4 AC005412.3-201ENST00000580309 715 ntBASIC21.26■□□□□ 0.99
UBE3BQ7Z3V4 MIR4515-201ENST00000584082 81 ntBASIC21.26■□□□□ 0.99
UBE3BQ7Z3V4 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC21.26■□□□□ 0.99
UBE3BQ7Z3V4 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC21.26■□□□□ 0.99
UBE3BQ7Z3V4 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC21.26■□□□□ 0.99
UBE3BQ7Z3V4 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC21.26■□□□□ 0.99
UBE3BQ7Z3V4 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
UBE3BQ7Z3V4 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
UBE3BQ7Z3V4 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
UBE3BQ7Z3V4 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
UBE3BQ7Z3V4 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
UBE3BQ7Z3V4 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
UBE3BQ7Z3V4 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
UBE3BQ7Z3V4 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC21.25■□□□□ 0.99
UBE3BQ7Z3V4 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
UBE3BQ7Z3V4 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC21.25■□□□□ 0.99
UBE3BQ7Z3V4 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
UBE3BQ7Z3V4 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
UBE3BQ7Z3V4 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
UBE3BQ7Z3V4 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
UBE3BQ7Z3V4 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
UBE3BQ7Z3V4 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
UBE3BQ7Z3V4 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
UBE3BQ7Z3V4 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC21.25■□□□□ 0.99
UBE3BQ7Z3V4 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
UBE3BQ7Z3V4 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC21.25■□□□□ 0.99
UBE3BQ7Z3V4 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
UBE3BQ7Z3V4 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
UBE3BQ7Z3V4 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC21.25■□□□□ 0.99
UBE3BQ7Z3V4 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC21.25■□□□□ 0.99
UBE3BQ7Z3V4 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
UBE3BQ7Z3V4 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC21.25■□□□□ 0.99
UBE3BQ7Z3V4 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
UBE3BQ7Z3V4 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
UBE3BQ7Z3V4 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC21.25■□□□□ 0.99
UBE3BQ7Z3V4 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
UBE3BQ7Z3V4 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC21.25■□□□□ 0.99
UBE3BQ7Z3V4 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
UBE3BQ7Z3V4 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC21.25■□□□□ 0.99
UBE3BQ7Z3V4 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
UBE3BQ7Z3V4 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC21.25■□□□□ 0.99
UBE3BQ7Z3V4 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
UBE3BQ7Z3V4 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC21.25■□□□□ 0.99
UBE3BQ7Z3V4 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
UBE3BQ7Z3V4 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC21.24■□□□□ 0.99
UBE3BQ7Z3V4 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC21.24■□□□□ 0.99
UBE3BQ7Z3V4 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC21.24■□□□□ 0.99
UBE3BQ7Z3V4 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
UBE3BQ7Z3V4 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
UBE3BQ7Z3V4 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
UBE3BQ7Z3V4 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC21.24■□□□□ 0.99
UBE3BQ7Z3V4 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
UBE3BQ7Z3V4 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
UBE3BQ7Z3V4 LBH-203ENST00000404397 543 ntTSL 4 BASIC21.24■□□□□ 0.99
UBE3BQ7Z3V4 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC21.24■□□□□ 0.99
UBE3BQ7Z3V4 HMGA1P7-201ENST00000406908 502 ntBASIC21.24■□□□□ 0.99
UBE3BQ7Z3V4 PMS2P2-201ENST00000425039 1128 ntBASIC21.24■□□□□ 0.99
UBE3BQ7Z3V4 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC21.24■□□□□ 0.99
UBE3BQ7Z3V4 AC140658.5-201ENST00000438532 169 ntBASIC21.24■□□□□ 0.99
UBE3BQ7Z3V4 AC112191.1-201ENST00000523689 701 ntBASIC21.24■□□□□ 0.99
UBE3BQ7Z3V4 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC21.24■□□□□ 0.99
UBE3BQ7Z3V4 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
UBE3BQ7Z3V4 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
UBE3BQ7Z3V4 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC21.24■□□□□ 0.99
UBE3BQ7Z3V4 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
UBE3BQ7Z3V4 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC21.24■□□□□ 0.99
UBE3BQ7Z3V4 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC21.24■□□□□ 0.99
UBE3BQ7Z3V4 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
UBE3BQ7Z3V4 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC21.24■□□□□ 0.99
UBE3BQ7Z3V4 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC21.24■□□□□ 0.99
UBE3BQ7Z3V4 SLC22A20-204ENST00000530038 1673 ntBASIC21.24■□□□□ 0.99
UBE3BQ7Z3V4 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
UBE3BQ7Z3V4 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC21.24■□□□□ 0.99
UBE3BQ7Z3V4 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC21.24■□□□□ 0.99
UBE3BQ7Z3V4 AC141586.5-201ENST00000624546 2050 ntBASIC21.24■□□□□ 0.99
UBE3BQ7Z3V4 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
UBE3BQ7Z3V4 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC21.23■□□□□ 0.99
UBE3BQ7Z3V4 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
UBE3BQ7Z3V4 STX3-203ENST00000529177 1571 ntTSL 2 BASIC21.23■□□□□ 0.99
UBE3BQ7Z3V4 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
UBE3BQ7Z3V4 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
UBE3BQ7Z3V4 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
UBE3BQ7Z3V4 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
UBE3BQ7Z3V4 ADH5P3-201ENST00000433842 1137 ntBASIC21.23■□□□□ 0.99
UBE3BQ7Z3V4 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
UBE3BQ7Z3V4 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC21.23■□□□□ 0.99
UBE3BQ7Z3V4 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC21.23■□□□□ 0.99
UBE3BQ7Z3V4 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC21.23■□□□□ 0.99
UBE3BQ7Z3V4 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC21.23■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 59.4 ms