Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
RC3H1Q5TC82 KRT8P49-201ENST00000604166 1432 ntBASIC21.32■■□□□ 1
RC3H1Q5TC82 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RC3H1Q5TC82 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
RC3H1Q5TC82 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RC3H1Q5TC82 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RC3H1Q5TC82 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC21.32■■□□□ 1
RC3H1Q5TC82 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RC3H1Q5TC82 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
RC3H1Q5TC82 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
RC3H1Q5TC82 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RC3H1Q5TC82 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC21.32■■□□□ 1
RC3H1Q5TC82 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC21.32■■□□□ 1
RC3H1Q5TC82 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
RC3H1Q5TC82 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC21.32■■□□□ 1
RC3H1Q5TC82 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC21.32■■□□□ 1
RC3H1Q5TC82 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC21.32■■□□□ 1
RC3H1Q5TC82 CDK4-206ENST00000549606 558 ntTSL 2 BASIC21.32■■□□□ 1
RC3H1Q5TC82 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
RC3H1Q5TC82 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC21.32■■□□□ 1
RC3H1Q5TC82 RAB34-223ENST00000636154 730 ntTSL 2 BASIC21.32■■□□□ 1
RC3H1Q5TC82 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC21.32■■□□□ 1
RC3H1Q5TC82 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
RC3H1Q5TC82 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC21.32■■□□□ 1
RC3H1Q5TC82 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC21.32■■□□□ 1
RC3H1Q5TC82 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC21.32■■□□□ 1
RC3H1Q5TC82 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC21.32■■□□□ 1
RC3H1Q5TC82 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC21.32■■□□□ 1
RC3H1Q5TC82 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC21.32■■□□□ 1
RC3H1Q5TC82 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
RC3H1Q5TC82 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC21.31■■□□□ 1
RC3H1Q5TC82 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC21.31■■□□□ 1
RC3H1Q5TC82 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC21.31■■□□□ 1
RC3H1Q5TC82 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
RC3H1Q5TC82 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC21.31■■□□□ 1
RC3H1Q5TC82 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC21.31■■□□□ 1
RC3H1Q5TC82 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
RC3H1Q5TC82 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
RC3H1Q5TC82 LINC00896-202ENST00000609602 2128 ntBASIC21.31■■□□□ 1
RC3H1Q5TC82 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC21.31■■□□□ 1
RC3H1Q5TC82 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
RC3H1Q5TC82 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
RC3H1Q5TC82 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC21.31■■□□□ 1
RC3H1Q5TC82 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC21.31■■□□□ 1
RC3H1Q5TC82 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC21.31■■□□□ 1
RC3H1Q5TC82 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
RC3H1Q5TC82 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC21.31■■□□□ 1
RC3H1Q5TC82 ARSEP1-201ENST00000420443 635 ntBASIC21.31■■□□□ 1
RC3H1Q5TC82 U91328.1-201ENST00000437528 223 ntBASIC21.31■■□□□ 1
RC3H1Q5TC82 STARD13-205ENST00000439831 945 ntTSL 2 BASIC21.31■■□□□ 1
RC3H1Q5TC82 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC21.31■■□□□ 1
RC3H1Q5TC82 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC21.31■■□□□ 1
RC3H1Q5TC82 PRR29-204ENST00000577953 565 ntTSL 4 BASIC21.31■■□□□ 1
RC3H1Q5TC82 AL844908.2-201ENST00000609461 460 ntBASIC21.31■■□□□ 1
RC3H1Q5TC82 AC008738.7-201ENST00000609744 511 ntBASIC21.31■■□□□ 1
RC3H1Q5TC82 TEX28P1-201ENST00000613479 1221 ntBASIC21.31■■□□□ 1
RC3H1Q5TC82 TEX28P2-201ENST00000617764 1221 ntBASIC21.31■■□□□ 1
RC3H1Q5TC82 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
RC3H1Q5TC82 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
RC3H1Q5TC82 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC21.31■■□□□ 1
RC3H1Q5TC82 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
RC3H1Q5TC82 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC21.31■■□□□ 1
RC3H1Q5TC82 NME9-203ENST00000383180 2133 ntTSL 2 BASIC21.31■■□□□ 1
RC3H1Q5TC82 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC21.3■■□□□ 1
RC3H1Q5TC82 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
RC3H1Q5TC82 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
RC3H1Q5TC82 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC21.3■■□□□ 1
RC3H1Q5TC82 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC21.3■■□□□ 1
RC3H1Q5TC82 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
RC3H1Q5TC82 HLA-H-201ENST00000383620 1096 ntBASIC21.3■■□□□ 1
RC3H1Q5TC82 CDK2AP2P3-201ENST00000422476 372 ntBASIC21.3■■□□□ 1
RC3H1Q5TC82 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC21.3■■□□□ 1
RC3H1Q5TC82 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC21.3■■□□□ 1
RC3H1Q5TC82 API5-211ENST00000534695 560 ntTSL 5 BASIC21.3■■□□□ 1
RC3H1Q5TC82 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC21.3■■□□□ 1
RC3H1Q5TC82 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC21.3■■□□□ 1
RC3H1Q5TC82 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC21.3■■□□□ 1
RC3H1Q5TC82 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC21.3■■□□□ 1
RC3H1Q5TC82 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC21.3■■□□□ 1
RC3H1Q5TC82 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC21.3■■□□□ 1
RC3H1Q5TC82 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC21.3■■□□□ 1
RC3H1Q5TC82 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
RC3H1Q5TC82 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
RC3H1Q5TC82 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
RC3H1Q5TC82 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
RC3H1Q5TC82 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC21.29■■□□□ 1
RC3H1Q5TC82 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
RC3H1Q5TC82 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC21.29■■□□□ 1
RC3H1Q5TC82 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC21.29■■□□□ 1
RC3H1Q5TC82 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
RC3H1Q5TC82 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC21.29■■□□□ 1
RC3H1Q5TC82 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC21.29■■□□□ 1
RC3H1Q5TC82 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC21.29■■□□□ 1
RC3H1Q5TC82 AL355312.1-201ENST00000407115 2176 ntBASIC21.29■■□□□ 1
RC3H1Q5TC82 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
RC3H1Q5TC82 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC21.29■■□□□ 1
RC3H1Q5TC82 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC21.29■■□□□ 1
RC3H1Q5TC82 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
RC3H1Q5TC82 FAM220BP-201ENST00000377689 816 ntBASIC21.29■■□□□ 1
RC3H1Q5TC82 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC21.29■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms