Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC17.26■□□□□ 0.35
PTPN4P29074 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
PTPN4P29074 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PTPN4P29074 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC17.26■□□□□ 0.35
PTPN4P29074 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PTPN4P29074 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC17.26■□□□□ 0.35
PTPN4P29074 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
PTPN4P29074 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PTPN4P29074 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
PTPN4P29074 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC17.26■□□□□ 0.35
PTPN4P29074 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
PTPN4P29074 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PTPN4P29074 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PTPN4P29074 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PTPN4P29074 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PTPN4P29074 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC17.25■□□□□ 0.35
PTPN4P29074 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PTPN4P29074 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PTPN4P29074 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PTPN4P29074 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
PTPN4P29074 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PTPN4P29074 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PTPN4P29074 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PTPN4P29074 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
PTPN4P29074 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PTPN4P29074 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PTPN4P29074 AC124864.1-201ENST00000623408 392 ntBASIC17.25■□□□□ 0.35
PTPN4P29074 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC17.25■□□□□ 0.35
PTPN4P29074 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
PTPN4P29074 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PTPN4P29074 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PTPN4P29074 AC022188.1-201ENST00000620960 1664 ntBASIC17.25■□□□□ 0.35
PTPN4P29074 AC116353.5-201ENST00000638148 1699 ntBASIC17.25■□□□□ 0.35
PTPN4P29074 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PTPN4P29074 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC17.25■□□□□ 0.35
PTPN4P29074 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
PTPN4P29074 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PTPN4P29074 REXO1L11P-201ENST00000620964 1927 ntBASIC17.25■□□□□ 0.35
PTPN4P29074 AC007950.2-201ENST00000615045 2347 ntBASIC17.25■□□□□ 0.35
PTPN4P29074 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PTPN4P29074 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PTPN4P29074 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
PTPN4P29074 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PTPN4P29074 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC17.24■□□□□ 0.35
PTPN4P29074 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC17.24■□□□□ 0.35
PTPN4P29074 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
PTPN4P29074 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PTPN4P29074 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
PTPN4P29074 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PTPN4P29074 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PTPN4P29074 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PTPN4P29074 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC17.24■□□□□ 0.35
PTPN4P29074 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
PTPN4P29074 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PTPN4P29074 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
PTPN4P29074 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PTPN4P29074 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PTPN4P29074 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PTPN4P29074 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PTPN4P29074 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC17.24■□□□□ 0.35
PTPN4P29074 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PTPN4P29074 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PTPN4P29074 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
PTPN4P29074 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PTPN4P29074 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PTPN4P29074 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
PTPN4P29074 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC17.24■□□□□ 0.35
PTPN4P29074 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC17.24■□□□□ 0.35
PTPN4P29074 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
PTPN4P29074 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC17.24■□□□□ 0.35
PTPN4P29074 AL592071.1-201ENST00000611956 408 ntBASIC17.24■□□□□ 0.35
PTPN4P29074 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PTPN4P29074 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PTPN4P29074 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PTPN4P29074 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
PTPN4P29074 CYP2T1P-202ENST00000641596 2535 ntBASIC17.24■□□□□ 0.35
PTPN4P29074 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
PTPN4P29074 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC17.24■□□□□ 0.35
PTPN4P29074 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PTPN4P29074 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC17.24■□□□□ 0.35
PTPN4P29074 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PTPN4P29074 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
PTPN4P29074 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PTPN4P29074 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC17.24■□□□□ 0.35
PTPN4P29074 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PTPN4P29074 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PTPN4P29074 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC17.24■□□□□ 0.35
PTPN4P29074 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC17.23■□□□□ 0.35
PTPN4P29074 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
PTPN4P29074 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
PTPN4P29074 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PTPN4P29074 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PTPN4P29074 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC17.23■□□□□ 0.35
PTPN4P29074 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC17.23■□□□□ 0.35
PTPN4P29074 LINC00167-201ENST00000530583 1419 ntBASIC17.23■□□□□ 0.35
PTPN4P29074 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
PTPN4P29074 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PTPN4P29074 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC17.23■□□□□ 0.35
PTPN4P29074 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
PTPN4P29074 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms