Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 GPR89P-201ENST00000407924 1495 ntBASIC15.71■□□□□ 0.1
MSX1P28360 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
MSX1P28360 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC15.71■□□□□ 0.1
MSX1P28360 EGFEM1P-202ENST00000431685 1563 ntBASIC15.7■□□□□ 0.1
MSX1P28360 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
MSX1P28360 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
MSX1P28360 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
MSX1P28360 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
MSX1P28360 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
MSX1P28360 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
MSX1P28360 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
MSX1P28360 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
MSX1P28360 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
MSX1P28360 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC15.7■□□□□ 0.1
MSX1P28360 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC15.7■□□□□ 0.1
MSX1P28360 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC15.7■□□□□ 0.1
MSX1P28360 RNA5SP415-201ENST00000517246 115 ntBASIC15.7■□□□□ 0.1
MSX1P28360 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
MSX1P28360 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC15.7■□□□□ 0.1
MSX1P28360 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
MSX1P28360 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
MSX1P28360 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC15.7■□□□□ 0.1
MSX1P28360 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
MSX1P28360 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC15.7■□□□□ 0.1
MSX1P28360 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
MSX1P28360 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC15.7■□□□□ 0.1
MSX1P28360 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
MSX1P28360 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
MSX1P28360 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC15.7■□□□□ 0.1
MSX1P28360 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
MSX1P28360 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC15.7■□□□□ 0.1
MSX1P28360 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
MSX1P28360 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
MSX1P28360 PP12613-201ENST00000424958 2230 ntBASIC15.7■□□□□ 0.1
MSX1P28360 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
MSX1P28360 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC15.7■□□□□ 0.1
MSX1P28360 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
MSX1P28360 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
MSX1P28360 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC15.69■□□□□ 0.1
MSX1P28360 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC15.69■□□□□ 0.1
MSX1P28360 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
MSX1P28360 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
MSX1P28360 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC15.69■□□□□ 0.1
MSX1P28360 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
MSX1P28360 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
MSX1P28360 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC15.69■□□□□ 0.1
MSX1P28360 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC15.69■□□□□ 0.1
MSX1P28360 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
MSX1P28360 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
MSX1P28360 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC15.69■□□□□ 0.1
MSX1P28360 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
MSX1P28360 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
MSX1P28360 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC15.69■□□□□ 0.1
MSX1P28360 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
MSX1P28360 IMP4-203ENST00000409935 958 ntTSL 5 BASIC15.69■□□□□ 0.1
MSX1P28360 KRT18P3-201ENST00000451602 1288 ntBASIC15.69■□□□□ 0.1
MSX1P28360 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC15.69■□□□□ 0.1
MSX1P28360 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC15.69■□□□□ 0.1
MSX1P28360 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC15.69■□□□□ 0.1
MSX1P28360 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC15.69■□□□□ 0.1
MSX1P28360 SDCCAG3P1-201ENST00000589292 1150 ntBASIC15.69■□□□□ 0.1
MSX1P28360 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
MSX1P28360 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC15.69■□□□□ 0.1
MSX1P28360 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
MSX1P28360 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC15.69■□□□□ 0.1
MSX1P28360 AC055717.3-201ENST00000622967 595 ntBASIC15.69■□□□□ 0.1
MSX1P28360 PGM5P2-202ENST00000637225 1043 ntBASIC15.69■□□□□ 0.1
MSX1P28360 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
MSX1P28360 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
MSX1P28360 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
MSX1P28360 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC15.69■□□□□ 0.1
MSX1P28360 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
MSX1P28360 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
MSX1P28360 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
MSX1P28360 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
MSX1P28360 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
MSX1P28360 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
MSX1P28360 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
MSX1P28360 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC15.69■□□□□ 0.1
MSX1P28360 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
MSX1P28360 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
MSX1P28360 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
MSX1P28360 AL590787.1-201ENST00000568856 1315 ntBASIC15.68■□□□□ 0.1
MSX1P28360 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
MSX1P28360 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC15.68■□□□□ 0.1
MSX1P28360 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
MSX1P28360 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
MSX1P28360 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
MSX1P28360 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
MSX1P28360 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
MSX1P28360 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
MSX1P28360 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC15.68■□□□□ 0.1
MSX1P28360 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
MSX1P28360 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC15.68■□□□□ 0.1
MSX1P28360 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
MSX1P28360 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
MSX1P28360 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
MSX1P28360 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
MSX1P28360 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC15.68■□□□□ 0.1
MSX1P28360 SLC25A1P3-201ENST00000395415 828 ntBASIC15.68■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms