Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC16.61■□□□□ 0.25
HOXC4P09017 U1.21-201ENST00000580816 167 ntBASIC16.61■□□□□ 0.25
HOXC4P09017 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC16.61■□□□□ 0.25
HOXC4P09017 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC16.61■□□□□ 0.25
HOXC4P09017 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC16.61■□□□□ 0.25
HOXC4P09017 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
HOXC4P09017 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
HOXC4P09017 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
HOXC4P09017 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
HOXC4P09017 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
HOXC4P09017 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HOXC4P09017 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
HOXC4P09017 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HOXC4P09017 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HOXC4P09017 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC16.6■□□□□ 0.25
HOXC4P09017 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC16.6■□□□□ 0.25
HOXC4P09017 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HOXC4P09017 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
HOXC4P09017 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC16.6■□□□□ 0.25
HOXC4P09017 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC16.6■□□□□ 0.25
HOXC4P09017 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC16.6■□□□□ 0.25
HOXC4P09017 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HOXC4P09017 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HOXC4P09017 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HOXC4P09017 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC16.6■□□□□ 0.25
HOXC4P09017 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
HOXC4P09017 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
HOXC4P09017 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
HOXC4P09017 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
HOXC4P09017 RN7SL589P-201ENST00000481268 310 ntBASIC16.6■□□□□ 0.25
HOXC4P09017 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC16.6■□□□□ 0.25
HOXC4P09017 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC16.6■□□□□ 0.25
HOXC4P09017 RARRES2P8-201ENST00000566335 367 ntBASIC16.6■□□□□ 0.25
HOXC4P09017 AC022145.2-201ENST00000598203 171 ntBASIC16.6■□□□□ 0.25
HOXC4P09017 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HOXC4P09017 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC16.6■□□□□ 0.25
HOXC4P09017 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC16.6■□□□□ 0.25
HOXC4P09017 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HOXC4P09017 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC16.6■□□□□ 0.25
HOXC4P09017 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC16.6■□□□□ 0.25
HOXC4P09017 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HOXC4P09017 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
HOXC4P09017 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HOXC4P09017 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
HOXC4P09017 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HOXC4P09017 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC16.6■□□□□ 0.25
HOXC4P09017 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HOXC4P09017 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
HOXC4P09017 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
HOXC4P09017 AC108860.2-201ENST00000562760 2183 ntBASIC16.6■□□□□ 0.25
HOXC4P09017 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
HOXC4P09017 AL023806.1-201ENST00000603994 1649 ntBASIC16.59■□□□□ 0.25
HOXC4P09017 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC16.59■□□□□ 0.25
HOXC4P09017 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HOXC4P09017 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HOXC4P09017 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
HOXC4P09017 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
HOXC4P09017 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HOXC4P09017 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HOXC4P09017 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HOXC4P09017 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HOXC4P09017 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HOXC4P09017 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC16.59■□□□□ 0.25
HOXC4P09017 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HOXC4P09017 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
HOXC4P09017 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
HOXC4P09017 LBH-203ENST00000404397 543 ntTSL 4 BASIC16.59■□□□□ 0.25
HOXC4P09017 AC004461.1-201ENST00000412461 403 ntBASIC16.59■□□□□ 0.25
HOXC4P09017 TFAMP1-201ENST00000412727 736 ntBASIC16.59■□□□□ 0.25
HOXC4P09017 PMS2P2-201ENST00000425039 1128 ntBASIC16.59■□□□□ 0.25
HOXC4P09017 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
HOXC4P09017 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
HOXC4P09017 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
HOXC4P09017 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC16.59■□□□□ 0.25
HOXC4P09017 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HOXC4P09017 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HOXC4P09017 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC16.59■□□□□ 0.25
HOXC4P09017 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC16.59■□□□□ 0.25
HOXC4P09017 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
HOXC4P09017 INO80E-210ENST00000567705 880 ntTSL 3 BASIC16.59■□□□□ 0.25
HOXC4P09017 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC16.59■□□□□ 0.25
HOXC4P09017 AL031055.1-201ENST00000606362 631 ntBASIC16.59■□□□□ 0.25
HOXC4P09017 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC16.59■□□□□ 0.25
HOXC4P09017 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HOXC4P09017 KRT18P28-201ENST00000453838 1332 ntBASIC16.59■□□□□ 0.25
HOXC4P09017 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HOXC4P09017 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
HOXC4P09017 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC16.59■□□□□ 0.25
HOXC4P09017 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
HOXC4P09017 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
HOXC4P09017 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
HOXC4P09017 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC16.58■□□□□ 0.25
HOXC4P09017 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC16.58■□□□□ 0.25
HOXC4P09017 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
HOXC4P09017 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.25
HOXC4P09017 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC16.58■□□□□ 0.25
HOXC4P09017 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC16.58■□□□□ 0.25
HOXC4P09017 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC16.58■□□□□ 0.25
HOXC4P09017 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
HOXC4P09017 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 194.8 ms