Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 MIR7706-201ENST00000613747 67 ntBASIC17.99■□□□□ 0.47
APOEP02649 ABBA01031661.1-201ENST00000634362 1253 ntBASIC17.99■□□□□ 0.47
APOEP02649 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC17.99■□□□□ 0.47
APOEP02649 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
APOEP02649 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
APOEP02649 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
APOEP02649 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.99■□□□□ 0.47
APOEP02649 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
APOEP02649 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
APOEP02649 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
APOEP02649 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
APOEP02649 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
APOEP02649 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
APOEP02649 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
APOEP02649 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
APOEP02649 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
APOEP02649 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
APOEP02649 LINC00982-205ENST00000420957 435 ntBASIC17.98■□□□□ 0.47
APOEP02649 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
APOEP02649 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC17.98■□□□□ 0.47
APOEP02649 RNA5SP419-201ENST00000515908 135 ntBASIC17.98■□□□□ 0.47
APOEP02649 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
APOEP02649 AC105339.3-201ENST00000560043 636 ntBASIC17.98■□□□□ 0.47
APOEP02649 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC17.98■□□□□ 0.47
APOEP02649 AL139424.1-201ENST00000607572 797 ntBASIC17.98■□□□□ 0.47
APOEP02649 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC17.98■□□□□ 0.47
APOEP02649 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC17.98■□□□□ 0.47
APOEP02649 MIR1199-201ENST00000621445 119 ntBASIC17.98■□□□□ 0.47
APOEP02649 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC17.98■□□□□ 0.47
APOEP02649 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
APOEP02649 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
APOEP02649 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
APOEP02649 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
APOEP02649 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC17.98■□□□□ 0.47
APOEP02649 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
APOEP02649 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
APOEP02649 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
APOEP02649 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC17.98■□□□□ 0.47
APOEP02649 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
APOEP02649 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
APOEP02649 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
APOEP02649 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
APOEP02649 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC17.97■□□□□ 0.47
APOEP02649 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC17.97■□□□□ 0.47
APOEP02649 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC17.97■□□□□ 0.47
APOEP02649 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC17.97■□□□□ 0.47
APOEP02649 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC17.97■□□□□ 0.47
APOEP02649 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
APOEP02649 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
APOEP02649 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC17.97■□□□□ 0.47
APOEP02649 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
APOEP02649 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
APOEP02649 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
APOEP02649 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
APOEP02649 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
APOEP02649 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC17.97■□□□□ 0.47
APOEP02649 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC17.97■□□□□ 0.47
APOEP02649 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
APOEP02649 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC17.97■□□□□ 0.47
APOEP02649 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC17.97■□□□□ 0.47
APOEP02649 AL049840.3-201ENST00000602669 611 ntBASIC17.97■□□□□ 0.47
APOEP02649 AC004706.3-202ENST00000621574 984 ntBASIC17.97■□□□□ 0.47
APOEP02649 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
APOEP02649 AC099398.1-201ENST00000567919 2776 ntBASIC17.97■□□□□ 0.47
APOEP02649 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC17.97■□□□□ 0.47
APOEP02649 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC17.97■□□□□ 0.47
APOEP02649 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC17.97■□□□□ 0.47
APOEP02649 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
APOEP02649 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
APOEP02649 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC17.97■□□□□ 0.47
APOEP02649 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
APOEP02649 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
APOEP02649 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
APOEP02649 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
APOEP02649 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
APOEP02649 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
APOEP02649 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC17.96■□□□□ 0.47
APOEP02649 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
APOEP02649 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
APOEP02649 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
APOEP02649 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
APOEP02649 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
APOEP02649 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
APOEP02649 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
APOEP02649 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
APOEP02649 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC17.96■□□□□ 0.47
APOEP02649 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC17.96■□□□□ 0.47
APOEP02649 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC17.96■□□□□ 0.47
APOEP02649 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC17.96■□□□□ 0.47
APOEP02649 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC17.96■□□□□ 0.47
APOEP02649 RPS29-206ENST00000557111 488 ntTSL 2 BASIC17.96■□□□□ 0.47
APOEP02649 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC17.96■□□□□ 0.47
APOEP02649 LITAF-211ENST00000572255 516 ntTSL 4 BASIC17.96■□□□□ 0.47
APOEP02649 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC17.96■□□□□ 0.47
APOEP02649 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC17.96■□□□□ 0.47
APOEP02649 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC17.96■□□□□ 0.47
APOEP02649 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC17.96■□□□□ 0.47
APOEP02649 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
APOEP02649 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC17.96■□□□□ 0.47
APOEP02649 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms