Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL2A1P02458 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL2A1P02458 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
COL2A1P02458 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
COL2A1P02458 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC19.78■□□□□ 0.76
COL2A1P02458 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL2A1P02458 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL2A1P02458 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL2A1P02458 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
COL2A1P02458 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL2A1P02458 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
COL2A1P02458 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
COL2A1P02458 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
COL2A1P02458 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL2A1P02458 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
COL2A1P02458 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL2A1P02458 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC19.78■□□□□ 0.76
COL2A1P02458 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
COL2A1P02458 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC19.78■□□□□ 0.76
COL2A1P02458 MIR943-201ENST00000401286 94 ntBASIC19.78■□□□□ 0.76
COL2A1P02458 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
COL2A1P02458 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC19.78■□□□□ 0.76
COL2A1P02458 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
COL2A1P02458 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC19.78■□□□□ 0.76
COL2A1P02458 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL2A1P02458 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC19.78■□□□□ 0.76
COL2A1P02458 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC19.78■□□□□ 0.76
COL2A1P02458 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
COL2A1P02458 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL2A1P02458 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC19.78■□□□□ 0.76
COL2A1P02458 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL2A1P02458 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL2A1P02458 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
COL2A1P02458 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL2A1P02458 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
COL2A1P02458 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL2A1P02458 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL2A1P02458 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
COL2A1P02458 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
COL2A1P02458 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
COL2A1P02458 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
COL2A1P02458 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
COL2A1P02458 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC19.77■□□□□ 0.76
COL2A1P02458 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC19.77■□□□□ 0.76
COL2A1P02458 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC19.77■□□□□ 0.76
COL2A1P02458 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC19.77■□□□□ 0.76
COL2A1P02458 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC19.77■□□□□ 0.76
COL2A1P02458 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL2A1P02458 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC19.77■□□□□ 0.75
COL2A1P02458 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL2A1P02458 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC19.76■□□□□ 0.75
COL2A1P02458 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL2A1P02458 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
COL2A1P02458 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL2A1P02458 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
COL2A1P02458 TREML5P-201ENST00000421694 576 ntBASIC19.76■□□□□ 0.75
COL2A1P02458 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC19.76■□□□□ 0.75
COL2A1P02458 BASP1P1-201ENST00000430708 665 ntBASIC19.76■□□□□ 0.75
COL2A1P02458 WDR53-204ENST00000433160 887 ntTSL 5 BASIC19.76■□□□□ 0.75
COL2A1P02458 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC19.76■□□□□ 0.75
COL2A1P02458 KRT18P34-201ENST00000488218 1270 ntBASIC19.76■□□□□ 0.75
COL2A1P02458 AC069120.2-201ENST00000524091 540 ntBASIC19.76■□□□□ 0.75
COL2A1P02458 AL138918.1-201ENST00000568306 659 ntBASIC19.76■□□□□ 0.75
COL2A1P02458 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC19.76■□□□□ 0.75
COL2A1P02458 HFE2-206ENST00000634927 506 ntTSL 4 BASIC19.76■□□□□ 0.75
COL2A1P02458 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL2A1P02458 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
COL2A1P02458 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC19.76■□□□□ 0.75
COL2A1P02458 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
COL2A1P02458 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL2A1P02458 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC19.76■□□□□ 0.75
COL2A1P02458 FO538757.1-201ENST00000623083 1397 ntBASIC19.76■□□□□ 0.75
COL2A1P02458 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL2A1P02458 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
COL2A1P02458 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
COL2A1P02458 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
COL2A1P02458 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC19.75■□□□□ 0.75
COL2A1P02458 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC19.75■□□□□ 0.75
COL2A1P02458 CENPM-205ENST00000404067 905 ntTSL 3 BASIC19.75■□□□□ 0.75
COL2A1P02458 AC092580.3-201ENST00000430932 139 ntBASIC19.75■□□□□ 0.75
COL2A1P02458 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC19.75■□□□□ 0.75
COL2A1P02458 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC19.75■□□□□ 0.75
COL2A1P02458 MIR4745-201ENST00000577608 62 ntBASIC19.75■□□□□ 0.75
COL2A1P02458 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL2A1P02458 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC19.75■□□□□ 0.75
COL2A1P02458 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
COL2A1P02458 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC19.75■□□□□ 0.75
COL2A1P02458 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL2A1P02458 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
COL2A1P02458 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL2A1P02458 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
COL2A1P02458 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL2A1P02458 CROCCP2-202ENST00000412962 2773 ntBASIC19.75■□□□□ 0.75
COL2A1P02458 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL2A1P02458 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL2A1P02458 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL2A1P02458 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL2A1P02458 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
COL2A1P02458 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC19.75■□□□□ 0.75
COL2A1P02458 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms