Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
SMKR1H3BMG3 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
SMKR1H3BMG3 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC12.58□□□□□ -0.4
SMKR1H3BMG3 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC12.58□□□□□ -0.4
SMKR1H3BMG3 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC12.58□□□□□ -0.4
SMKR1H3BMG3 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC12.58□□□□□ -0.4
SMKR1H3BMG3 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC12.58□□□□□ -0.4
SMKR1H3BMG3 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC12.58□□□□□ -0.4
SMKR1H3BMG3 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
SMKR1H3BMG3 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC12.58□□□□□ -0.4
SMKR1H3BMG3 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
SMKR1H3BMG3 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
SMKR1H3BMG3 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
SMKR1H3BMG3 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC12.58□□□□□ -0.4
SMKR1H3BMG3 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
SMKR1H3BMG3 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
SMKR1H3BMG3 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC12.58□□□□□ -0.4
SMKR1H3BMG3 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
SMKR1H3BMG3 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
SMKR1H3BMG3 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC12.58□□□□□ -0.4
SMKR1H3BMG3 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
SMKR1H3BMG3 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
SMKR1H3BMG3 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
SMKR1H3BMG3 AC005052.1-201ENST00000625181 2492 ntBASIC12.57□□□□□ -0.4
SMKR1H3BMG3 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
SMKR1H3BMG3 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC12.57□□□□□ -0.4
SMKR1H3BMG3 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
SMKR1H3BMG3 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC12.57□□□□□ -0.4
SMKR1H3BMG3 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
SMKR1H3BMG3 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
SMKR1H3BMG3 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
SMKR1H3BMG3 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
SMKR1H3BMG3 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC12.57□□□□□ -0.4
SMKR1H3BMG3 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
SMKR1H3BMG3 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC12.57□□□□□ -0.4
SMKR1H3BMG3 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC12.57□□□□□ -0.4
SMKR1H3BMG3 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
SMKR1H3BMG3 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
SMKR1H3BMG3 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
SMKR1H3BMG3 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
SMKR1H3BMG3 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
SMKR1H3BMG3 TSPY17P-201ENST00000450329 467 ntBASIC12.57□□□□□ -0.4
SMKR1H3BMG3 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC12.57□□□□□ -0.4
SMKR1H3BMG3 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC12.57□□□□□ -0.4
SMKR1H3BMG3 RPPH1-201ENST00000516869 333 ntBASIC12.57□□□□□ -0.4
SMKR1H3BMG3 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC12.57□□□□□ -0.4
SMKR1H3BMG3 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC12.57□□□□□ -0.4
SMKR1H3BMG3 GRAMD4P8-201ENST00000605465 1115 ntBASIC12.57□□□□□ -0.4
SMKR1H3BMG3 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC12.57□□□□□ -0.4
SMKR1H3BMG3 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC12.57□□□□□ -0.4
SMKR1H3BMG3 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC12.57□□□□□ -0.4
SMKR1H3BMG3 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
SMKR1H3BMG3 MST1L-201ENST00000442552 2185 ntBASIC12.57□□□□□ -0.4
SMKR1H3BMG3 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC12.57□□□□□ -0.4
SMKR1H3BMG3 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC12.57□□□□□ -0.4
SMKR1H3BMG3 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
SMKR1H3BMG3 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
SMKR1H3BMG3 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC12.57□□□□□ -0.4
SMKR1H3BMG3 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
SMKR1H3BMG3 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
SMKR1H3BMG3 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
SMKR1H3BMG3 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
SMKR1H3BMG3 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC12.57□□□□□ -0.4
SMKR1H3BMG3 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
SMKR1H3BMG3 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
SMKR1H3BMG3 ALOX12P2-203ENST00000570921 1945 ntBASIC12.56□□□□□ -0.4
SMKR1H3BMG3 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
SMKR1H3BMG3 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
SMKR1H3BMG3 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
SMKR1H3BMG3 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
SMKR1H3BMG3 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC12.56□□□□□ -0.4
SMKR1H3BMG3 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
SMKR1H3BMG3 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC12.56□□□□□ -0.4
SMKR1H3BMG3 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
SMKR1H3BMG3 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
SMKR1H3BMG3 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC12.56□□□□□ -0.4
SMKR1H3BMG3 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC12.56□□□□□ -0.4
SMKR1H3BMG3 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
SMKR1H3BMG3 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
SMKR1H3BMG3 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
SMKR1H3BMG3 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC12.56□□□□□ -0.4
SMKR1H3BMG3 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC12.56□□□□□ -0.4
SMKR1H3BMG3 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC12.56□□□□□ -0.4
SMKR1H3BMG3 AC128676.1-201ENST00000454392 318 ntBASIC12.56□□□□□ -0.4
SMKR1H3BMG3 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
SMKR1H3BMG3 GRAP-204ENST00000573099 846 ntTSL 3 BASIC12.56□□□□□ -0.4
SMKR1H3BMG3 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC12.56□□□□□ -0.4
SMKR1H3BMG3 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
SMKR1H3BMG3 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC12.56□□□□□ -0.4
SMKR1H3BMG3 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
SMKR1H3BMG3 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
SMKR1H3BMG3 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
SMKR1H3BMG3 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC12.56□□□□□ -0.4
SMKR1H3BMG3 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC12.56□□□□□ -0.4
SMKR1H3BMG3 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
SMKR1H3BMG3 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
SMKR1H3BMG3 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
SMKR1H3BMG3 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC12.56□□□□□ -0.4
SMKR1H3BMG3 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
SMKR1H3BMG3 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC12.56□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms