Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TCRBV7S3A2A0A539 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
TCRBV7S3A2A0A539 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC17.43■□□□□ 0.38
TCRBV7S3A2A0A539 HLA-A-202ENST00000376806 1854 ntBASIC17.43■□□□□ 0.38
TCRBV7S3A2A0A539 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TCRBV7S3A2A0A539 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TCRBV7S3A2A0A539 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC17.43■□□□□ 0.38
TCRBV7S3A2A0A539 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC17.43■□□□□ 0.38
TCRBV7S3A2A0A539 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
TCRBV7S3A2A0A539 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TCRBV7S3A2A0A539 LINC02199-201ENST00000506655 2702 ntBASIC17.42■□□□□ 0.38
TCRBV7S3A2A0A539 AC097637.2-201ENST00000624096 1997 ntBASIC17.42■□□□□ 0.38
TCRBV7S3A2A0A539 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TCRBV7S3A2A0A539 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC17.42■□□□□ 0.38
TCRBV7S3A2A0A539 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
TCRBV7S3A2A0A539 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TCRBV7S3A2A0A539 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC17.42■□□□□ 0.38
TCRBV7S3A2A0A539 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC17.42■□□□□ 0.38
TCRBV7S3A2A0A539 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
TCRBV7S3A2A0A539 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TCRBV7S3A2A0A539 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
TCRBV7S3A2A0A539 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC17.42■□□□□ 0.38
TCRBV7S3A2A0A539 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TCRBV7S3A2A0A539 AC092364.2-201ENST00000596710 2692 ntBASIC17.42■□□□□ 0.38
TCRBV7S3A2A0A539 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC17.42■□□□□ 0.38
TCRBV7S3A2A0A539 AL020989.1-201ENST00000422979 469 ntBASIC17.42■□□□□ 0.38
TCRBV7S3A2A0A539 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC17.42■□□□□ 0.38
TCRBV7S3A2A0A539 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC17.42■□□□□ 0.38
TCRBV7S3A2A0A539 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
TCRBV7S3A2A0A539 SIGLEC30P-201ENST00000455569 941 ntBASIC17.42■□□□□ 0.38
TCRBV7S3A2A0A539 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC17.42■□□□□ 0.38
TCRBV7S3A2A0A539 CYB561-217ENST00000582997 877 ntTSL 5 BASIC17.42■□□□□ 0.38
TCRBV7S3A2A0A539 DBP-204ENST00000599385 709 ntTSL 3 BASIC17.42■□□□□ 0.38
TCRBV7S3A2A0A539 BCL10-202ENST00000620248 774 ntTSL 5 BASIC17.42■□□□□ 0.38
TCRBV7S3A2A0A539 AL358472.4-201ENST00000633140 710 ntBASIC17.42■□□□□ 0.38
TCRBV7S3A2A0A539 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TCRBV7S3A2A0A539 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC17.42■□□□□ 0.38
TCRBV7S3A2A0A539 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TCRBV7S3A2A0A539 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC17.42■□□□□ 0.38
TCRBV7S3A2A0A539 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TCRBV7S3A2A0A539 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TCRBV7S3A2A0A539 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
TCRBV7S3A2A0A539 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
TCRBV7S3A2A0A539 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TCRBV7S3A2A0A539 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TCRBV7S3A2A0A539 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
TCRBV7S3A2A0A539 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TCRBV7S3A2A0A539 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TCRBV7S3A2A0A539 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
TCRBV7S3A2A0A539 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
TCRBV7S3A2A0A539 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC17.41■□□□□ 0.38
TCRBV7S3A2A0A539 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TCRBV7S3A2A0A539 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC17.41■□□□□ 0.38
TCRBV7S3A2A0A539 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TCRBV7S3A2A0A539 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TCRBV7S3A2A0A539 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC17.41■□□□□ 0.38
TCRBV7S3A2A0A539 ACTG1P4-201ENST00000425123 1122 ntBASIC17.41■□□□□ 0.38
TCRBV7S3A2A0A539 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
TCRBV7S3A2A0A539 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC17.41■□□□□ 0.38
TCRBV7S3A2A0A539 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC17.41■□□□□ 0.38
TCRBV7S3A2A0A539 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TCRBV7S3A2A0A539 AC092329.2-201ENST00000598402 547 ntBASIC17.41■□□□□ 0.38
TCRBV7S3A2A0A539 AC092119.3-201ENST00000612618 583 ntBASIC17.41■□□□□ 0.38
TCRBV7S3A2A0A539 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC17.41■□□□□ 0.38
TCRBV7S3A2A0A539 AL590326.2-201ENST00000625139 305 ntBASIC17.41■□□□□ 0.38
TCRBV7S3A2A0A539 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
TCRBV7S3A2A0A539 AP000550.4-202ENST00000639755 178 ntBASIC17.41■□□□□ 0.38
TCRBV7S3A2A0A539 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TCRBV7S3A2A0A539 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC17.41■□□□□ 0.38
TCRBV7S3A2A0A539 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
TCRBV7S3A2A0A539 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
TCRBV7S3A2A0A539 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TCRBV7S3A2A0A539 GCK-202ENST00000345378 2421 ntTSL 2 BASIC17.41■□□□□ 0.38
TCRBV7S3A2A0A539 AL391256.1-201ENST00000443260 1855 ntBASIC17.41■□□□□ 0.38
TCRBV7S3A2A0A539 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
TCRBV7S3A2A0A539 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TCRBV7S3A2A0A539 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TCRBV7S3A2A0A539 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
TCRBV7S3A2A0A539 AC008741.2-201ENST00000612792 3115 ntBASIC17.41■□□□□ 0.38
TCRBV7S3A2A0A539 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TCRBV7S3A2A0A539 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TCRBV7S3A2A0A539 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TCRBV7S3A2A0A539 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC17.4■□□□□ 0.38
TCRBV7S3A2A0A539 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TCRBV7S3A2A0A539 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TCRBV7S3A2A0A539 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TCRBV7S3A2A0A539 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TCRBV7S3A2A0A539 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TCRBV7S3A2A0A539 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
TCRBV7S3A2A0A539 HNRNPRP1-201ENST00000453465 1695 ntBASIC17.4■□□□□ 0.38
TCRBV7S3A2A0A539 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TCRBV7S3A2A0A539 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TCRBV7S3A2A0A539 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TCRBV7S3A2A0A539 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
TCRBV7S3A2A0A539 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC17.4■□□□□ 0.38
TCRBV7S3A2A0A539 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC17.4■□□□□ 0.38
TCRBV7S3A2A0A539 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TCRBV7S3A2A0A539 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TCRBV7S3A2A0A539 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC17.4■□□□□ 0.38
TCRBV7S3A2A0A539 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms