Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
LHX3Q9UBR4 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
LHX3Q9UBR4 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC17.22■□□□□ 0.35
LHX3Q9UBR4 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LHX3Q9UBR4 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC17.22■□□□□ 0.35
LHX3Q9UBR4 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LHX3Q9UBR4 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
LHX3Q9UBR4 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
LHX3Q9UBR4 AC096734.2-201ENST00000562054 433 ntBASIC17.22■□□□□ 0.35
LHX3Q9UBR4 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LHX3Q9UBR4 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
LHX3Q9UBR4 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
LHX3Q9UBR4 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LHX3Q9UBR4 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LHX3Q9UBR4 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC17.22■□□□□ 0.35
LHX3Q9UBR4 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LHX3Q9UBR4 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC17.22■□□□□ 0.35
LHX3Q9UBR4 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LHX3Q9UBR4 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
LHX3Q9UBR4 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC17.22■□□□□ 0.35
LHX3Q9UBR4 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
LHX3Q9UBR4 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LHX3Q9UBR4 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LHX3Q9UBR4 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC17.21■□□□□ 0.35
LHX3Q9UBR4 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
LHX3Q9UBR4 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
LHX3Q9UBR4 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LHX3Q9UBR4 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
LHX3Q9UBR4 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC17.21■□□□□ 0.35
LHX3Q9UBR4 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC17.21■□□□□ 0.35
LHX3Q9UBR4 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
LHX3Q9UBR4 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
LHX3Q9UBR4 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC17.21■□□□□ 0.35
LHX3Q9UBR4 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LHX3Q9UBR4 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LHX3Q9UBR4 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LHX3Q9UBR4 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LHX3Q9UBR4 FABP5-202ENST00000396359 986 ntTSL 5 BASIC17.21■□□□□ 0.35
LHX3Q9UBR4 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC17.21■□□□□ 0.35
LHX3Q9UBR4 RHOQP3-201ENST00000437982 621 ntBASIC17.21■□□□□ 0.35
LHX3Q9UBR4 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC17.21■□□□□ 0.35
LHX3Q9UBR4 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC17.21■□□□□ 0.35
LHX3Q9UBR4 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC17.21■□□□□ 0.35
LHX3Q9UBR4 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC17.21■□□□□ 0.35
LHX3Q9UBR4 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC17.21■□□□□ 0.35
LHX3Q9UBR4 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC17.21■□□□□ 0.35
LHX3Q9UBR4 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC17.21■□□□□ 0.35
LHX3Q9UBR4 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC17.21■□□□□ 0.35
LHX3Q9UBR4 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
LHX3Q9UBR4 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LHX3Q9UBR4 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC17.21■□□□□ 0.34
LHX3Q9UBR4 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
LHX3Q9UBR4 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC17.21■□□□□ 0.34
LHX3Q9UBR4 AC106820.2-201ENST00000563775 3264 ntBASIC17.2■□□□□ 0.34
LHX3Q9UBR4 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
LHX3Q9UBR4 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC17.2■□□□□ 0.34
LHX3Q9UBR4 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
LHX3Q9UBR4 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC17.2■□□□□ 0.34
LHX3Q9UBR4 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LHX3Q9UBR4 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
LHX3Q9UBR4 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
LHX3Q9UBR4 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC17.2■□□□□ 0.34
LHX3Q9UBR4 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC17.2■□□□□ 0.34
LHX3Q9UBR4 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC17.2■□□□□ 0.34
LHX3Q9UBR4 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
LHX3Q9UBR4 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LHX3Q9UBR4 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC17.2■□□□□ 0.34
LHX3Q9UBR4 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
LHX3Q9UBR4 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC17.2■□□□□ 0.34
LHX3Q9UBR4 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC17.2■□□□□ 0.34
LHX3Q9UBR4 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC17.2■□□□□ 0.34
LHX3Q9UBR4 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC17.2■□□□□ 0.34
LHX3Q9UBR4 CD63-210ENST00000550776 870 ntTSL 5 BASIC17.2■□□□□ 0.34
LHX3Q9UBR4 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
LHX3Q9UBR4 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC17.2■□□□□ 0.34
LHX3Q9UBR4 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC17.2■□□□□ 0.34
LHX3Q9UBR4 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC17.2■□□□□ 0.34
LHX3Q9UBR4 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC17.2■□□□□ 0.34
LHX3Q9UBR4 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
LHX3Q9UBR4 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
LHX3Q9UBR4 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC17.2■□□□□ 0.34
LHX3Q9UBR4 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
LHX3Q9UBR4 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
LHX3Q9UBR4 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
LHX3Q9UBR4 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
LHX3Q9UBR4 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
LHX3Q9UBR4 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LHX3Q9UBR4 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LHX3Q9UBR4 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LHX3Q9UBR4 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC17.2■□□□□ 0.34
LHX3Q9UBR4 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
LHX3Q9UBR4 PMS2P7-201ENST00000506558 1336 ntBASIC17.2■□□□□ 0.34
LHX3Q9UBR4 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC17.19■□□□□ 0.34
LHX3Q9UBR4 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
LHX3Q9UBR4 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
LHX3Q9UBR4 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC17.19■□□□□ 0.34
LHX3Q9UBR4 PC-214ENST00000628663 1470 ntTSL 5 BASIC17.19■□□□□ 0.34
LHX3Q9UBR4 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LHX3Q9UBR4 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC17.19■□□□□ 0.34
LHX3Q9UBR4 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms