Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
PCDH9Q9HC56 AC091304.2-201ENST00000564639 760 ntBASIC17.74■□□□□ 0.43
PCDH9Q9HC56 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC17.74■□□□□ 0.43
PCDH9Q9HC56 GZMM-202ENST00000592501 941 ntTSL 3 BASIC17.74■□□□□ 0.43
PCDH9Q9HC56 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
PCDH9Q9HC56 IGHV3OR16-7-201ENST00000604106 360 ntBASIC17.74■□□□□ 0.43
PCDH9Q9HC56 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC17.74■□□□□ 0.43
PCDH9Q9HC56 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
PCDH9Q9HC56 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PCDH9Q9HC56 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
PCDH9Q9HC56 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
PCDH9Q9HC56 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC17.74■□□□□ 0.43
PCDH9Q9HC56 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC17.74■□□□□ 0.43
PCDH9Q9HC56 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PCDH9Q9HC56 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC17.74■□□□□ 0.43
PCDH9Q9HC56 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
PCDH9Q9HC56 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
PCDH9Q9HC56 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC17.73■□□□□ 0.43
PCDH9Q9HC56 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PCDH9Q9HC56 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PCDH9Q9HC56 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PCDH9Q9HC56 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC17.73■□□□□ 0.43
PCDH9Q9HC56 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
PCDH9Q9HC56 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC17.73■□□□□ 0.43
PCDH9Q9HC56 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
PCDH9Q9HC56 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC17.73■□□□□ 0.43
PCDH9Q9HC56 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PCDH9Q9HC56 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PCDH9Q9HC56 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC17.73■□□□□ 0.43
PCDH9Q9HC56 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
PCDH9Q9HC56 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PCDH9Q9HC56 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PCDH9Q9HC56 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PCDH9Q9HC56 AC003669.1-201ENST00000334569 611 ntBASIC17.73■□□□□ 0.43
PCDH9Q9HC56 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PCDH9Q9HC56 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC17.73■□□□□ 0.43
PCDH9Q9HC56 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC17.73■□□□□ 0.43
PCDH9Q9HC56 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC17.73■□□□□ 0.43
PCDH9Q9HC56 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC17.73■□□□□ 0.43
PCDH9Q9HC56 SDHD-206ENST00000528182 754 ntTSL 3 BASIC17.73■□□□□ 0.43
PCDH9Q9HC56 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC17.73■□□□□ 0.43
PCDH9Q9HC56 AL732292.2-201ENST00000609649 430 ntBASIC17.73■□□□□ 0.43
PCDH9Q9HC56 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC17.73■□□□□ 0.43
PCDH9Q9HC56 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC17.73■□□□□ 0.43
PCDH9Q9HC56 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC17.73■□□□□ 0.43
PCDH9Q9HC56 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PCDH9Q9HC56 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
PCDH9Q9HC56 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
PCDH9Q9HC56 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
PCDH9Q9HC56 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PCDH9Q9HC56 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC17.73■□□□□ 0.43
PCDH9Q9HC56 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PCDH9Q9HC56 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
PCDH9Q9HC56 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC17.73■□□□□ 0.43
PCDH9Q9HC56 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC17.73■□□□□ 0.43
PCDH9Q9HC56 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
PCDH9Q9HC56 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PCDH9Q9HC56 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
PCDH9Q9HC56 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
PCDH9Q9HC56 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PCDH9Q9HC56 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
PCDH9Q9HC56 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PCDH9Q9HC56 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
PCDH9Q9HC56 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC17.72■□□□□ 0.43
PCDH9Q9HC56 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC17.72■□□□□ 0.43
PCDH9Q9HC56 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PCDH9Q9HC56 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC17.72■□□□□ 0.43
PCDH9Q9HC56 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
PCDH9Q9HC56 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC17.72■□□□□ 0.43
PCDH9Q9HC56 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC17.72■□□□□ 0.43
PCDH9Q9HC56 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PCDH9Q9HC56 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
PCDH9Q9HC56 AL603756.1-201ENST00000606511 2163 ntBASIC17.72■□□□□ 0.43
PCDH9Q9HC56 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC17.72■□□□□ 0.43
PCDH9Q9HC56 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
PCDH9Q9HC56 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
PCDH9Q9HC56 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
PCDH9Q9HC56 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PCDH9Q9HC56 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC17.72■□□□□ 0.43
PCDH9Q9HC56 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PCDH9Q9HC56 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC17.72■□□□□ 0.43
PCDH9Q9HC56 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC17.72■□□□□ 0.43
PCDH9Q9HC56 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC17.72■□□□□ 0.43
PCDH9Q9HC56 AD001527.2-201ENST00000622994 785 ntBASIC17.72■□□□□ 0.43
PCDH9Q9HC56 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
PCDH9Q9HC56 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PCDH9Q9HC56 AC132938.5-201ENST00000624980 1813 ntBASIC17.72■□□□□ 0.43
PCDH9Q9HC56 FRMD8P1-201ENST00000440433 1524 ntBASIC17.72■□□□□ 0.43
PCDH9Q9HC56 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PCDH9Q9HC56 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
PCDH9Q9HC56 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC17.71■□□□□ 0.43
PCDH9Q9HC56 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
PCDH9Q9HC56 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC17.71■□□□□ 0.43
PCDH9Q9HC56 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC17.71■□□□□ 0.43
PCDH9Q9HC56 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
PCDH9Q9HC56 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
PCDH9Q9HC56 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
PCDH9Q9HC56 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
PCDH9Q9HC56 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
PCDH9Q9HC56 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms