Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
ZNF541Q9H0D2 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
ZNF541Q9H0D2 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
ZNF541Q9H0D2 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
ZNF541Q9H0D2 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC20.31■□□□□ 0.84
ZNF541Q9H0D2 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC20.31■□□□□ 0.84
ZNF541Q9H0D2 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC20.31■□□□□ 0.84
ZNF541Q9H0D2 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC20.31■□□□□ 0.84
ZNF541Q9H0D2 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
ZNF541Q9H0D2 MIR6805-201ENST00000615055 62 ntBASIC20.31■□□□□ 0.84
ZNF541Q9H0D2 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
ZNF541Q9H0D2 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
ZNF541Q9H0D2 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC20.31■□□□□ 0.84
ZNF541Q9H0D2 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
ZNF541Q9H0D2 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
ZNF541Q9H0D2 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC20.31■□□□□ 0.84
ZNF541Q9H0D2 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
ZNF541Q9H0D2 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC20.31■□□□□ 0.84
ZNF541Q9H0D2 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC20.31■□□□□ 0.84
ZNF541Q9H0D2 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
ZNF541Q9H0D2 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC20.31■□□□□ 0.84
ZNF541Q9H0D2 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
ZNF541Q9H0D2 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
ZNF541Q9H0D2 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
ZNF541Q9H0D2 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
ZNF541Q9H0D2 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
ZNF541Q9H0D2 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC20.31■□□□□ 0.84
ZNF541Q9H0D2 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC20.3■□□□□ 0.84
ZNF541Q9H0D2 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
ZNF541Q9H0D2 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
ZNF541Q9H0D2 RPL37AP1-201ENST00000412502 279 ntBASIC20.3■□□□□ 0.84
ZNF541Q9H0D2 AP006294.1-201ENST00000415407 339 ntBASIC20.3■□□□□ 0.84
ZNF541Q9H0D2 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC20.3■□□□□ 0.84
ZNF541Q9H0D2 RN7SL752P-201ENST00000463779 287 ntBASIC20.3■□□□□ 0.84
ZNF541Q9H0D2 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
ZNF541Q9H0D2 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC20.3■□□□□ 0.84
ZNF541Q9H0D2 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
ZNF541Q9H0D2 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC20.3■□□□□ 0.84
ZNF541Q9H0D2 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
ZNF541Q9H0D2 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
ZNF541Q9H0D2 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
ZNF541Q9H0D2 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
ZNF541Q9H0D2 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
ZNF541Q9H0D2 HARS-204ENST00000438307 1789 ntTSL 2 BASIC20.3■□□□□ 0.84
ZNF541Q9H0D2 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
ZNF541Q9H0D2 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
ZNF541Q9H0D2 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
ZNF541Q9H0D2 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
ZNF541Q9H0D2 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
ZNF541Q9H0D2 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC20.3■□□□□ 0.84
ZNF541Q9H0D2 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
ZNF541Q9H0D2 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC20.3■□□□□ 0.84
ZNF541Q9H0D2 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC20.3■□□□□ 0.84
ZNF541Q9H0D2 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
ZNF541Q9H0D2 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC20.3■□□□□ 0.84
ZNF541Q9H0D2 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
ZNF541Q9H0D2 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
ZNF541Q9H0D2 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC20.29■□□□□ 0.84
ZNF541Q9H0D2 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC20.29■□□□□ 0.84
ZNF541Q9H0D2 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC20.29■□□□□ 0.84
ZNF541Q9H0D2 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
ZNF541Q9H0D2 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
ZNF541Q9H0D2 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
ZNF541Q9H0D2 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC20.29■□□□□ 0.84
ZNF541Q9H0D2 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC20.29■□□□□ 0.84
ZNF541Q9H0D2 AC104794.3-201ENST00000566840 1248 ntBASIC20.29■□□□□ 0.84
ZNF541Q9H0D2 AC091167.2-201ENST00000579581 588 ntBASIC20.29■□□□□ 0.84
ZNF541Q9H0D2 AC073389.1-201ENST00000595595 795 ntBASIC20.29■□□□□ 0.84
ZNF541Q9H0D2 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
ZNF541Q9H0D2 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
ZNF541Q9H0D2 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC20.29■□□□□ 0.84
ZNF541Q9H0D2 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC20.29■□□□□ 0.84
ZNF541Q9H0D2 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC20.29■□□□□ 0.84
ZNF541Q9H0D2 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC20.29■□□□□ 0.84
ZNF541Q9H0D2 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
ZNF541Q9H0D2 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
ZNF541Q9H0D2 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
ZNF541Q9H0D2 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
ZNF541Q9H0D2 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
ZNF541Q9H0D2 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
ZNF541Q9H0D2 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
ZNF541Q9H0D2 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC20.29■□□□□ 0.84
ZNF541Q9H0D2 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
ZNF541Q9H0D2 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC20.29■□□□□ 0.84
ZNF541Q9H0D2 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
ZNF541Q9H0D2 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC20.29■□□□□ 0.84
ZNF541Q9H0D2 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
ZNF541Q9H0D2 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC20.28■□□□□ 0.84
ZNF541Q9H0D2 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC20.28■□□□□ 0.84
ZNF541Q9H0D2 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
ZNF541Q9H0D2 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC20.28■□□□□ 0.84
ZNF541Q9H0D2 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC20.28■□□□□ 0.84
ZNF541Q9H0D2 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
ZNF541Q9H0D2 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC20.28■□□□□ 0.84
ZNF541Q9H0D2 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
ZNF541Q9H0D2 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.28■□□□□ 0.84
ZNF541Q9H0D2 LYSMD4-203ENST00000378904 2122 ntBASIC20.28■□□□□ 0.84
ZNF541Q9H0D2 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC20.28■□□□□ 0.84
ZNF541Q9H0D2 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
ZNF541Q9H0D2 FLJ13224-201ENST00000313737 1514 ntBASIC20.28■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms