Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC17.68■□□□□ 0.42
CDX2Q99626 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC17.68■□□□□ 0.42
CDX2Q99626 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CDX2Q99626 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CDX2Q99626 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CDX2Q99626 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CDX2Q99626 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CDX2Q99626 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC17.68■□□□□ 0.42
CDX2Q99626 MIR663B-201ENST00000408361 115 ntBASIC17.68■□□□□ 0.42
CDX2Q99626 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC17.68■□□□□ 0.42
CDX2Q99626 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CDX2Q99626 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC17.68■□□□□ 0.42
CDX2Q99626 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
CDX2Q99626 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC17.68■□□□□ 0.42
CDX2Q99626 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC17.68■□□□□ 0.42
CDX2Q99626 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CDX2Q99626 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC17.68■□□□□ 0.42
CDX2Q99626 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CDX2Q99626 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC17.68■□□□□ 0.42
CDX2Q99626 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CDX2Q99626 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC17.68■□□□□ 0.42
CDX2Q99626 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CDX2Q99626 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC17.68■□□□□ 0.42
CDX2Q99626 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC17.68■□□□□ 0.42
CDX2Q99626 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
CDX2Q99626 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC17.67■□□□□ 0.42
CDX2Q99626 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CDX2Q99626 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC17.67■□□□□ 0.42
CDX2Q99626 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CDX2Q99626 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CDX2Q99626 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC17.67■□□□□ 0.42
CDX2Q99626 RPS19-201ENST00000221975 500 ntTSL 3 BASIC17.67■□□□□ 0.42
CDX2Q99626 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC17.67■□□□□ 0.42
CDX2Q99626 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CDX2Q99626 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CDX2Q99626 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC17.67■□□□□ 0.42
CDX2Q99626 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC17.67■□□□□ 0.42
CDX2Q99626 CSF2RBP1-201ENST00000447905 391 ntBASIC17.67■□□□□ 0.42
CDX2Q99626 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
CDX2Q99626 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC17.67■□□□□ 0.42
CDX2Q99626 PIGL-212ENST00000581006 554 ntTSL 4 BASIC17.67■□□□□ 0.42
CDX2Q99626 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC17.67■□□□□ 0.42
CDX2Q99626 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CDX2Q99626 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
CDX2Q99626 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CDX2Q99626 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CDX2Q99626 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC17.67■□□□□ 0.42
CDX2Q99626 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CDX2Q99626 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
CDX2Q99626 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CDX2Q99626 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC17.66■□□□□ 0.42
CDX2Q99626 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC17.66■□□□□ 0.42
CDX2Q99626 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CDX2Q99626 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CDX2Q99626 NSL1-201ENST00000366976 722 ntTSL 2 BASIC17.66■□□□□ 0.42
CDX2Q99626 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
CDX2Q99626 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC17.66■□□□□ 0.42
CDX2Q99626 SLC25A24P2-201ENST00000415059 510 ntBASIC17.66■□□□□ 0.42
CDX2Q99626 FAM21FP-201ENST00000426241 1131 ntBASIC17.66■□□□□ 0.42
CDX2Q99626 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
CDX2Q99626 AC007551.1-201ENST00000457394 519 ntBASIC17.66■□□□□ 0.42
CDX2Q99626 USP32P1-208ENST00000506594 1164 ntBASIC17.66■□□□□ 0.42
CDX2Q99626 ZNF767P-206ENST00000513792 565 ntBASIC17.66■□□□□ 0.42
CDX2Q99626 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC17.66■□□□□ 0.42
CDX2Q99626 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
CDX2Q99626 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC17.66■□□□□ 0.42
CDX2Q99626 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC17.66■□□□□ 0.42
CDX2Q99626 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC17.66■□□□□ 0.42
CDX2Q99626 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC17.66■□□□□ 0.42
CDX2Q99626 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
CDX2Q99626 AC010319.3-201ENST00000597028 470 ntBASIC17.66■□□□□ 0.42
CDX2Q99626 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CDX2Q99626 SLC22A20-204ENST00000530038 1673 ntBASIC17.66■□□□□ 0.42
CDX2Q99626 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC17.66■□□□□ 0.42
CDX2Q99626 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CDX2Q99626 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CDX2Q99626 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CDX2Q99626 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
CDX2Q99626 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
CDX2Q99626 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CDX2Q99626 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
CDX2Q99626 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC17.66■□□□□ 0.42
CDX2Q99626 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC17.66■□□□□ 0.42
CDX2Q99626 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
CDX2Q99626 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
CDX2Q99626 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CDX2Q99626 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CDX2Q99626 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
CDX2Q99626 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CDX2Q99626 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CDX2Q99626 LBX2-201ENST00000341396 886 ntTSL 3 BASIC17.65■□□□□ 0.42
CDX2Q99626 FAM220BP-201ENST00000377689 816 ntBASIC17.65■□□□□ 0.42
CDX2Q99626 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CDX2Q99626 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC17.65■□□□□ 0.42
CDX2Q99626 AC233724.13-201ENST00000598383 410 ntBASIC17.65■□□□□ 0.42
CDX2Q99626 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC17.65■□□□□ 0.42
CDX2Q99626 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC17.65■□□□□ 0.42
CDX2Q99626 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CDX2Q99626 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC17.65■□□□□ 0.42
CDX2Q99626 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms