Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC12.89□□□□□ -0.35
LINC00477Q96M19 GPR89P-201ENST00000407924 1495 ntBASIC12.89□□□□□ -0.35
LINC00477Q96M19 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
LINC00477Q96M19 MED25-212ENST00000618715 1467 ntTSL 5 BASIC12.89□□□□□ -0.35
LINC00477Q96M19 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
LINC00477Q96M19 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
LINC00477Q96M19 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
LINC00477Q96M19 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
LINC00477Q96M19 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC12.89□□□□□ -0.35
LINC00477Q96M19 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC12.89□□□□□ -0.35
LINC00477Q96M19 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC12.89□□□□□ -0.35
LINC00477Q96M19 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
LINC00477Q96M19 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
LINC00477Q96M19 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
LINC00477Q96M19 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC00477Q96M19 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
LINC00477Q96M19 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC00477Q96M19 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC12.88□□□□□ -0.35
LINC00477Q96M19 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC12.88□□□□□ -0.35
LINC00477Q96M19 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
LINC00477Q96M19 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC00477Q96M19 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC12.88□□□□□ -0.35
LINC00477Q96M19 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC12.88□□□□□ -0.35
LINC00477Q96M19 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC00477Q96M19 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC12.88□□□□□ -0.35
LINC00477Q96M19 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC00477Q96M19 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC00477Q96M19 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC00477Q96M19 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC00477Q96M19 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC00477Q96M19 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC00477Q96M19 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC00477Q96M19 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
LINC00477Q96M19 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC12.88□□□□□ -0.35
LINC00477Q96M19 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
LINC00477Q96M19 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC12.88□□□□□ -0.35
LINC00477Q96M19 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC12.88□□□□□ -0.35
LINC00477Q96M19 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
LINC00477Q96M19 BX276092.5-203ENST00000456199 560 ntBASIC12.88□□□□□ -0.35
LINC00477Q96M19 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC12.88□□□□□ -0.35
LINC00477Q96M19 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC12.88□□□□□ -0.35
LINC00477Q96M19 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC00477Q96M19 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
LINC00477Q96M19 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC12.88□□□□□ -0.35
LINC00477Q96M19 RBM42-202ENST00000586618 771 ntTSL 3 BASIC12.88□□□□□ -0.35
LINC00477Q96M19 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
LINC00477Q96M19 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC12.88□□□□□ -0.35
LINC00477Q96M19 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC00477Q96M19 AL135999.2-201ENST00000622438 1686 ntBASIC12.88□□□□□ -0.35
LINC00477Q96M19 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
LINC00477Q96M19 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC00477Q96M19 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC00477Q96M19 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
LINC00477Q96M19 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC12.88□□□□□ -0.35
LINC00477Q96M19 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC12.88□□□□□ -0.35
LINC00477Q96M19 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
LINC00477Q96M19 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC00477Q96M19 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC00477Q96M19 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
LINC00477Q96M19 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
LINC00477Q96M19 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC00477Q96M19 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC12.88□□□□□ -0.35
LINC00477Q96M19 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC00477Q96M19 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC00477Q96M19 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC12.88□□□□□ -0.35
LINC00477Q96M19 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC00477Q96M19 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC00477Q96M19 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC00477Q96M19 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC00477Q96M19 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
LINC00477Q96M19 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC00477Q96M19 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC00477Q96M19 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
LINC00477Q96M19 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
LINC00477Q96M19 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
LINC00477Q96M19 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC12.87□□□□□ -0.35
LINC00477Q96M19 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC12.87□□□□□ -0.35
LINC00477Q96M19 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
LINC00477Q96M19 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
LINC00477Q96M19 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
LINC00477Q96M19 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC12.87□□□□□ -0.35
LINC00477Q96M19 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
LINC00477Q96M19 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC12.87□□□□□ -0.35
LINC00477Q96M19 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
LINC00477Q96M19 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
LINC00477Q96M19 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC12.87□□□□□ -0.35
LINC00477Q96M19 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
LINC00477Q96M19 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
LINC00477Q96M19 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
LINC00477Q96M19 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
LINC00477Q96M19 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC12.87□□□□□ -0.35
LINC00477Q96M19 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
LINC00477Q96M19 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
LINC00477Q96M19 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
LINC00477Q96M19 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
LINC00477Q96M19 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
LINC00477Q96M19 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC12.87□□□□□ -0.35
LINC00477Q96M19 AL845331.1-201ENST00000424978 1190 ntBASIC12.87□□□□□ -0.35
LINC00477Q96M19 NKTR-203ENST00000442970 646 ntTSL 2 BASIC12.87□□□□□ -0.35
LINC00477Q96M19 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC12.87□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms