Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
RTF1Q92541 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC22.31■■□□□ 1.16
RTF1Q92541 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC22.31■■□□□ 1.16
RTF1Q92541 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC22.31■■□□□ 1.16
RTF1Q92541 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC22.31■■□□□ 1.16
RTF1Q92541 AP001160.2-201ENST00000596071 487 ntBASIC22.31■■□□□ 1.16
RTF1Q92541 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC22.31■■□□□ 1.16
RTF1Q92541 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
RTF1Q92541 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
RTF1Q92541 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
RTF1Q92541 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC22.31■■□□□ 1.16
RTF1Q92541 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
RTF1Q92541 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC22.31■■□□□ 1.16
RTF1Q92541 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC22.31■■□□□ 1.16
RTF1Q92541 PKD1P1-201ENST00000458669 6805 ntBASIC22.3■■□□□ 1.16
RTF1Q92541 AC116353.5-201ENST00000638148 1699 ntBASIC22.3■■□□□ 1.16
RTF1Q92541 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC22.3■■□□□ 1.16
RTF1Q92541 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC22.3■■□□□ 1.16
RTF1Q92541 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
RTF1Q92541 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC22.3■■□□□ 1.16
RTF1Q92541 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
RTF1Q92541 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC22.3■■□□□ 1.16
RTF1Q92541 SLC25A1P3-201ENST00000395415 828 ntBASIC22.3■■□□□ 1.16
RTF1Q92541 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC22.3■■□□□ 1.16
RTF1Q92541 AC068137.2-201ENST00000605408 478 ntBASIC22.3■■□□□ 1.16
RTF1Q92541 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
RTF1Q92541 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC22.3■■□□□ 1.16
RTF1Q92541 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
RTF1Q92541 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC22.3■■□□□ 1.16
RTF1Q92541 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
RTF1Q92541 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
RTF1Q92541 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
RTF1Q92541 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC22.3■■□□□ 1.16
RTF1Q92541 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
RTF1Q92541 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
RTF1Q92541 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
RTF1Q92541 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC22.29■■□□□ 1.16
RTF1Q92541 ELL2P1-201ENST00000413990 1906 ntBASIC22.29■■□□□ 1.16
RTF1Q92541 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC22.29■■□□□ 1.16
RTF1Q92541 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC22.29■■□□□ 1.16
RTF1Q92541 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC22.29■■□□□ 1.16
RTF1Q92541 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
RTF1Q92541 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
RTF1Q92541 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC22.29■■□□□ 1.16
RTF1Q92541 NEK7-201ENST00000367383 586 ntTSL 2 BASIC22.29■■□□□ 1.16
RTF1Q92541 DDT-204ENST00000404092 805 ntTSL 3 BASIC22.29■■□□□ 1.16
RTF1Q92541 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC22.29■■□□□ 1.16
RTF1Q92541 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC22.29■■□□□ 1.16
RTF1Q92541 FAM58CP-201ENST00000435741 640 ntBASIC22.29■■□□□ 1.16
RTF1Q92541 DNAJB3-202ENST00000449667 1266 ntBASIC22.29■■□□□ 1.16
RTF1Q92541 CEND1P1-201ENST00000451006 455 ntBASIC22.29■■□□□ 1.16
RTF1Q92541 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC22.29■■□□□ 1.16
RTF1Q92541 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC22.29■■□□□ 1.16
RTF1Q92541 REXO1L3P-201ENST00000622202 1288 ntBASIC22.29■■□□□ 1.16
RTF1Q92541 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
RTF1Q92541 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
RTF1Q92541 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
RTF1Q92541 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
RTF1Q92541 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
RTF1Q92541 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
RTF1Q92541 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC22.29■■□□□ 1.16
RTF1Q92541 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC22.29■■□□□ 1.16
RTF1Q92541 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC22.29■■□□□ 1.16
RTF1Q92541 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
RTF1Q92541 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
RTF1Q92541 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
RTF1Q92541 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC22.29■■□□□ 1.16
RTF1Q92541 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
RTF1Q92541 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
RTF1Q92541 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC22.28■■□□□ 1.16
RTF1Q92541 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
RTF1Q92541 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC22.28■■□□□ 1.16
RTF1Q92541 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
RTF1Q92541 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
RTF1Q92541 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
RTF1Q92541 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
RTF1Q92541 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC22.28■■□□□ 1.16
RTF1Q92541 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC22.28■■□□□ 1.16
RTF1Q92541 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC22.28■■□□□ 1.16
RTF1Q92541 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
RTF1Q92541 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
RTF1Q92541 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC22.28■■□□□ 1.16
RTF1Q92541 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
RTF1Q92541 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC22.28■■□□□ 1.16
RTF1Q92541 AP006288.1-201ENST00000446065 395 ntBASIC22.28■■□□□ 1.16
RTF1Q92541 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC22.28■■□□□ 1.16
RTF1Q92541 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC22.28■■□□□ 1.16
RTF1Q92541 CFL1-202ENST00000524553 860 ntTSL 2 BASIC22.28■■□□□ 1.16
RTF1Q92541 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC22.28■■□□□ 1.16
RTF1Q92541 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC22.28■■□□□ 1.16
RTF1Q92541 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC22.28■■□□□ 1.16
RTF1Q92541 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
RTF1Q92541 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC22.28■■□□□ 1.16
RTF1Q92541 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC22.28■■□□□ 1.16
RTF1Q92541 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
RTF1Q92541 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
RTF1Q92541 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
RTF1Q92541 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
RTF1Q92541 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC22.28■■□□□ 1.16
RTF1Q92541 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC22.28■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms