Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC17.93■□□□□ 0.46
CHD9Q3L8U1 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CHD9Q3L8U1 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
CHD9Q3L8U1 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC17.92■□□□□ 0.46
CHD9Q3L8U1 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC17.92■□□□□ 0.46
CHD9Q3L8U1 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CHD9Q3L8U1 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CHD9Q3L8U1 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC17.92■□□□□ 0.46
CHD9Q3L8U1 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
CHD9Q3L8U1 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC17.92■□□□□ 0.46
CHD9Q3L8U1 BCYRN1-201ENST00000418539 200 ntBASIC17.92■□□□□ 0.46
CHD9Q3L8U1 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC17.92■□□□□ 0.46
CHD9Q3L8U1 AC092658.1-201ENST00000505836 891 ntBASIC17.92■□□□□ 0.46
CHD9Q3L8U1 AC135586.1-201ENST00000539323 574 ntBASIC17.92■□□□□ 0.46
CHD9Q3L8U1 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
CHD9Q3L8U1 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC17.92■□□□□ 0.46
CHD9Q3L8U1 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
CHD9Q3L8U1 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC17.92■□□□□ 0.46
CHD9Q3L8U1 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC17.92■□□□□ 0.46
CHD9Q3L8U1 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC17.92■□□□□ 0.46
CHD9Q3L8U1 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CHD9Q3L8U1 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC17.92■□□□□ 0.46
CHD9Q3L8U1 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC17.92■□□□□ 0.46
CHD9Q3L8U1 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC17.92■□□□□ 0.46
CHD9Q3L8U1 RASL12-203ENST00000434605 982 ntTSL 2 BASIC17.92■□□□□ 0.46
CHD9Q3L8U1 AC022210.1-201ENST00000449856 793 ntBASIC17.92■□□□□ 0.46
CHD9Q3L8U1 RPSAP52-203ENST00000622976 1023 ntBASIC17.92■□□□□ 0.46
CHD9Q3L8U1 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CHD9Q3L8U1 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC17.91■□□□□ 0.46
CHD9Q3L8U1 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CHD9Q3L8U1 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC17.91■□□□□ 0.46
CHD9Q3L8U1 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC17.91■□□□□ 0.46
CHD9Q3L8U1 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC17.91■□□□□ 0.46
CHD9Q3L8U1 AC012317.2-201ENST00000623305 2251 ntBASIC17.91■□□□□ 0.46
CHD9Q3L8U1 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC17.91■□□□□ 0.46
CHD9Q3L8U1 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC17.91■□□□□ 0.46
CHD9Q3L8U1 MPV17-208ENST00000405076 603 ntTSL 5 BASIC17.91■□□□□ 0.46
CHD9Q3L8U1 TTTY23B-201ENST00000442790 549 ntBASIC17.91■□□□□ 0.46
CHD9Q3L8U1 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC17.91■□□□□ 0.46
CHD9Q3L8U1 USB1-203ENST00000539737 1212 ntTSL 2 BASIC17.91■□□□□ 0.46
CHD9Q3L8U1 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
CHD9Q3L8U1 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CHD9Q3L8U1 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
CHD9Q3L8U1 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC17.91■□□□□ 0.46
CHD9Q3L8U1 AC093503.3-201ENST00000624917 2352 ntBASIC17.91■□□□□ 0.46
CHD9Q3L8U1 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC17.91■□□□□ 0.46
CHD9Q3L8U1 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CHD9Q3L8U1 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC17.91■□□□□ 0.46
CHD9Q3L8U1 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CHD9Q3L8U1 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CHD9Q3L8U1 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CHD9Q3L8U1 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CHD9Q3L8U1 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CHD9Q3L8U1 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CHD9Q3L8U1 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
CHD9Q3L8U1 FAM86MP-201ENST00000340703 885 ntBASIC17.9■□□□□ 0.46
CHD9Q3L8U1 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC17.9■□□□□ 0.46
CHD9Q3L8U1 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CHD9Q3L8U1 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC17.9■□□□□ 0.46
CHD9Q3L8U1 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
CHD9Q3L8U1 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC17.9■□□□□ 0.46
CHD9Q3L8U1 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CHD9Q3L8U1 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CHD9Q3L8U1 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
CHD9Q3L8U1 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
CHD9Q3L8U1 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CHD9Q3L8U1 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC17.9■□□□□ 0.46
CHD9Q3L8U1 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
CHD9Q3L8U1 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC17.9■□□□□ 0.46
CHD9Q3L8U1 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC17.9■□□□□ 0.46
CHD9Q3L8U1 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CHD9Q3L8U1 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC17.9■□□□□ 0.46
CHD9Q3L8U1 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC17.9■□□□□ 0.46
CHD9Q3L8U1 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
CHD9Q3L8U1 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC17.89■□□□□ 0.46
CHD9Q3L8U1 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.46
CHD9Q3L8U1 SPDYE19P-201ENST00000338590 713 ntBASIC17.89■□□□□ 0.46
CHD9Q3L8U1 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
CHD9Q3L8U1 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
CHD9Q3L8U1 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC17.89■□□□□ 0.46
CHD9Q3L8U1 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC17.89■□□□□ 0.45
CHD9Q3L8U1 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CHD9Q3L8U1 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CHD9Q3L8U1 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
CHD9Q3L8U1 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CHD9Q3L8U1 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CHD9Q3L8U1 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CHD9Q3L8U1 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC17.89■□□□□ 0.45
CHD9Q3L8U1 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC17.89■□□□□ 0.45
CHD9Q3L8U1 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC17.89■□□□□ 0.45
CHD9Q3L8U1 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC17.89■□□□□ 0.45
CHD9Q3L8U1 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CHD9Q3L8U1 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
CHD9Q3L8U1 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CHD9Q3L8U1 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC17.89■□□□□ 0.45
CHD9Q3L8U1 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC17.89■□□□□ 0.45
CHD9Q3L8U1 ELK1P1-201ENST00000485699 580 ntBASIC17.89■□□□□ 0.45
CHD9Q3L8U1 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC17.89■□□□□ 0.45
CHD9Q3L8U1 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC17.89■□□□□ 0.45
CHD9Q3L8U1 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC17.89■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 53.8 ms