Protein–RNA interactions for Protein: P61009

SPCS3, Signal peptidase complex subunit 3, humanhuman

Predictions only

Length 180 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPCS3P61009 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC14.03□□□□□ -0.16
SPCS3P61009 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
SPCS3P61009 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC14.03□□□□□ -0.16
SPCS3P61009 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SPCS3P61009 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SPCS3P61009 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
SPCS3P61009 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
SPCS3P61009 IGHGP-201ENST00000390555 1178 ntBASIC14.03□□□□□ -0.16
SPCS3P61009 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
SPCS3P61009 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
SPCS3P61009 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC14.03□□□□□ -0.16
SPCS3P61009 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
SPCS3P61009 CNP-204ENST00000472031 1019 ntTSL 2 BASIC14.03□□□□□ -0.16
SPCS3P61009 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC14.03□□□□□ -0.16
SPCS3P61009 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC14.03□□□□□ -0.16
SPCS3P61009 TMED1-207ENST00000591695 809 ntTSL 5 BASIC14.03□□□□□ -0.16
SPCS3P61009 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
SPCS3P61009 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC14.03□□□□□ -0.16
SPCS3P61009 LITAF-220ENST00000620789 692 ntTSL 5 BASIC14.03□□□□□ -0.16
SPCS3P61009 AL023973.1-201ENST00000624619 620 ntBASIC14.03□□□□□ -0.16
SPCS3P61009 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC14.03□□□□□ -0.16
SPCS3P61009 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SPCS3P61009 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
SPCS3P61009 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
SPCS3P61009 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
SPCS3P61009 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SPCS3P61009 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
SPCS3P61009 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
SPCS3P61009 ADM-208ENST00000534464 1640 ntTSL 2 BASIC14.03□□□□□ -0.16
SPCS3P61009 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC14.03□□□□□ -0.16
SPCS3P61009 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SPCS3P61009 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SPCS3P61009 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC14.03□□□□□ -0.16
SPCS3P61009 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC14.03□□□□□ -0.16
SPCS3P61009 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
SPCS3P61009 AC046185.3-201ENST00000623228 1824 ntBASIC14.03□□□□□ -0.16
SPCS3P61009 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
SPCS3P61009 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SPCS3P61009 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC14.03□□□□□ -0.16
SPCS3P61009 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
SPCS3P61009 AC005915.1-201ENST00000624912 2018 ntBASIC14.03□□□□□ -0.16
SPCS3P61009 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
SPCS3P61009 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
SPCS3P61009 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
SPCS3P61009 RUFY1-202ENST00000393438 2454 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
SPCS3P61009 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SPCS3P61009 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SPCS3P61009 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC14.03□□□□□ -0.16
SPCS3P61009 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
SPCS3P61009 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
SPCS3P61009 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
SPCS3P61009 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SPCS3P61009 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SPCS3P61009 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
SPCS3P61009 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
SPCS3P61009 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
SPCS3P61009 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SPCS3P61009 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
SPCS3P61009 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC14.02□□□□□ -0.16
SPCS3P61009 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SPCS3P61009 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
SPCS3P61009 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
SPCS3P61009 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC14.02□□□□□ -0.16
SPCS3P61009 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC14.02□□□□□ -0.16
SPCS3P61009 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC14.02□□□□□ -0.16
SPCS3P61009 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
SPCS3P61009 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC14.02□□□□□ -0.16
SPCS3P61009 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SPCS3P61009 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
SPCS3P61009 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC14.02□□□□□ -0.16
SPCS3P61009 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
SPCS3P61009 AL353692.3-201ENST00000407031 1396 ntBASIC14.02□□□□□ -0.17
SPCS3P61009 AC097374.2-201ENST00000618617 1306 ntBASIC14.02□□□□□ -0.17
SPCS3P61009 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SPCS3P61009 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SPCS3P61009 COX5BP2-201ENST00000392354 334 ntBASIC14.02□□□□□ -0.17
SPCS3P61009 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC14.02□□□□□ -0.17
SPCS3P61009 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
SPCS3P61009 AC068472.1-201ENST00000474589 881 ntBASIC14.02□□□□□ -0.17
SPCS3P61009 AP003733.1-201ENST00000491725 852 ntBASIC14.02□□□□□ -0.17
SPCS3P61009 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC14.02□□□□□ -0.17
SPCS3P61009 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
SPCS3P61009 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
SPCS3P61009 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
SPCS3P61009 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC14.02□□□□□ -0.17
SPCS3P61009 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC14.02□□□□□ -0.17
SPCS3P61009 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC14.02□□□□□ -0.17
SPCS3P61009 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC14.02□□□□□ -0.17
SPCS3P61009 AC068587.6-202ENST00000641839 5619 ntBASIC14.02□□□□□ -0.17
SPCS3P61009 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SPCS3P61009 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
SPCS3P61009 AGK-211ENST00000629555 2765 ntTSL 5 BASIC14.02□□□□□ -0.17
SPCS3P61009 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
SPCS3P61009 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
SPCS3P61009 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
SPCS3P61009 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SPCS3P61009 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC14.02□□□□□ -0.17
SPCS3P61009 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SPCS3P61009 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SPCS3P61009 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms