Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC16.67■□□□□ 0.26
HNF4AP41235 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
HNF4AP41235 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC16.67■□□□□ 0.26
HNF4AP41235 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
HNF4AP41235 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
HNF4AP41235 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC16.67■□□□□ 0.26
HNF4AP41235 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
HNF4AP41235 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
HNF4AP41235 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
HNF4AP41235 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
HNF4AP41235 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
HNF4AP41235 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
HNF4AP41235 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
HNF4AP41235 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
HNF4AP41235 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
HNF4AP41235 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HNF4AP41235 SPDYE21P-201ENST00000413323 827 ntBASIC16.67■□□□□ 0.26
HNF4AP41235 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
HNF4AP41235 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC16.67■□□□□ 0.26
HNF4AP41235 RBSN-204ENST00000449050 903 ntTSL 2 BASIC16.67■□□□□ 0.26
HNF4AP41235 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
HNF4AP41235 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC16.67■□□□□ 0.26
HNF4AP41235 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC16.67■□□□□ 0.26
HNF4AP41235 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
HNF4AP41235 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC16.67■□□□□ 0.26
HNF4AP41235 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC16.67■□□□□ 0.26
HNF4AP41235 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
HNF4AP41235 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC16.67■□□□□ 0.26
HNF4AP41235 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
HNF4AP41235 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
HNF4AP41235 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
HNF4AP41235 AC022211.2-201ENST00000585075 2527 ntBASIC16.67■□□□□ 0.26
HNF4AP41235 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC16.67■□□□□ 0.26
HNF4AP41235 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC16.67■□□□□ 0.26
HNF4AP41235 AC004817.3-201ENST00000602957 2129 ntBASIC16.67■□□□□ 0.26
HNF4AP41235 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
HNF4AP41235 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HNF4AP41235 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
HNF4AP41235 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HNF4AP41235 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
HNF4AP41235 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC16.67■□□□□ 0.26
HNF4AP41235 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
HNF4AP41235 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HNF4AP41235 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HNF4AP41235 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC16.66■□□□□ 0.26
HNF4AP41235 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
HNF4AP41235 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
HNF4AP41235 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC16.66■□□□□ 0.26
HNF4AP41235 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HNF4AP41235 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HNF4AP41235 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HNF4AP41235 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HNF4AP41235 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC16.66■□□□□ 0.26
HNF4AP41235 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HNF4AP41235 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
HNF4AP41235 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HNF4AP41235 EMD-201ENST00000369835 966 ntTSL 3 BASIC16.66■□□□□ 0.26
HNF4AP41235 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HNF4AP41235 TLE1-202ENST00000376484 666 ntTSL 3 BASIC16.66■□□□□ 0.26
HNF4AP41235 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC16.66■□□□□ 0.26
HNF4AP41235 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC16.66■□□□□ 0.26
HNF4AP41235 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC16.66■□□□□ 0.26
HNF4AP41235 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC16.66■□□□□ 0.26
HNF4AP41235 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC16.66■□□□□ 0.26
HNF4AP41235 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC16.66■□□□□ 0.26
HNF4AP41235 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC16.66■□□□□ 0.26
HNF4AP41235 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HNF4AP41235 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC16.66■□□□□ 0.26
HNF4AP41235 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC16.66■□□□□ 0.26
HNF4AP41235 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HNF4AP41235 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HNF4AP41235 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HNF4AP41235 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HNF4AP41235 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HNF4AP41235 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC16.66■□□□□ 0.26
HNF4AP41235 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HNF4AP41235 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC16.66■□□□□ 0.26
HNF4AP41235 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HNF4AP41235 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HNF4AP41235 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HNF4AP41235 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HNF4AP41235 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HNF4AP41235 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC16.65■□□□□ 0.26
HNF4AP41235 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HNF4AP41235 AC060834.1-201ENST00000443027 2032 ntBASIC16.65■□□□□ 0.26
HNF4AP41235 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HNF4AP41235 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HNF4AP41235 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC16.65■□□□□ 0.26
HNF4AP41235 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
HNF4AP41235 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
HNF4AP41235 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
HNF4AP41235 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HNF4AP41235 AP005117.1-201ENST00000584346 1413 ntBASIC16.65■□□□□ 0.26
HNF4AP41235 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC16.65■□□□□ 0.26
HNF4AP41235 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HNF4AP41235 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
HNF4AP41235 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HNF4AP41235 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC16.65■□□□□ 0.26
HNF4AP41235 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HNF4AP41235 ACTG1P4-201ENST00000425123 1122 ntBASIC16.65■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms