Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC28.33■■■□□ 2.12
CUX1P39880 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
CUX1P39880 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
CUX1P39880 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC28.32■■■□□ 2.12
CUX1P39880 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC28.32■■■□□ 2.12
CUX1P39880 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
CUX1P39880 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
CUX1P39880 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC28.32■■■□□ 2.12
CUX1P39880 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC28.32■■■□□ 2.12
CUX1P39880 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
CUX1P39880 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
CUX1P39880 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC28.32■■■□□ 2.12
CUX1P39880 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC28.32■■■□□ 2.12
CUX1P39880 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
CUX1P39880 TP53TG3HP-202ENST00000569755 579 ntBASIC28.32■■■□□ 2.12
CUX1P39880 AL359881.2-201ENST00000602973 570 ntBASIC28.32■■■□□ 2.12
CUX1P39880 AC021097.1-201ENST00000607902 574 ntBASIC28.32■■■□□ 2.12
CUX1P39880 AL133215.2-201ENST00000609242 977 ntBASIC28.32■■■□□ 2.12
CUX1P39880 RNA5-8SN1-201ENST00000610460 153 ntBASIC28.32■■■□□ 2.12
CUX1P39880 RNA5-8SN5-202ENST00000612463 153 ntBASIC28.32■■■□□ 2.12
CUX1P39880 RNA5-8SN4-201ENST00000613359 153 ntBASIC28.32■■■□□ 2.12
CUX1P39880 RNA5-8SN5-201ENST00000619471 153 ntBASIC28.32■■■□□ 2.12
CUX1P39880 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC28.31■■■□□ 2.12
CUX1P39880 KRT8P49-201ENST00000604166 1432 ntBASIC28.31■■■□□ 2.12
CUX1P39880 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC28.31■■■□□ 2.12
CUX1P39880 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC28.31■■■□□ 2.12
CUX1P39880 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
CUX1P39880 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC28.31■■■□□ 2.12
CUX1P39880 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC28.31■■■□□ 2.12
CUX1P39880 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC28.31■■■□□ 2.12
CUX1P39880 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC28.31■■■□□ 2.12
CUX1P39880 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC28.31■■■□□ 2.12
CUX1P39880 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
CUX1P39880 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
CUX1P39880 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC28.31■■■□□ 2.12
CUX1P39880 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC28.3■■■□□ 2.12
CUX1P39880 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
CUX1P39880 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC28.3■■■□□ 2.12
CUX1P39880 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC28.3■■■□□ 2.12
CUX1P39880 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC28.3■■■□□ 2.12
CUX1P39880 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC28.3■■■□□ 2.12
CUX1P39880 RPL37AP1-201ENST00000412502 279 ntBASIC28.3■■■□□ 2.12
CUX1P39880 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC28.3■■■□□ 2.12
CUX1P39880 PRR29-204ENST00000577953 565 ntTSL 4 BASIC28.3■■■□□ 2.12
CUX1P39880 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
CUX1P39880 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC28.3■■■□□ 2.12
CUX1P39880 RAB34-223ENST00000636154 730 ntTSL 2 BASIC28.3■■■□□ 2.12
CUX1P39880 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
CUX1P39880 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC28.3■■■□□ 2.12
CUX1P39880 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
CUX1P39880 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC28.3■■■□□ 2.12
CUX1P39880 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
CUX1P39880 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
CUX1P39880 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC28.3■■■□□ 2.12
CUX1P39880 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC28.3■■■□□ 2.12
CUX1P39880 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC28.29■■■□□ 2.12
CUX1P39880 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC28.29■■■□□ 2.12
CUX1P39880 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
CUX1P39880 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
CUX1P39880 PP14571-201ENST00000404327 934 ntTSL 2 BASIC28.29■■■□□ 2.12
CUX1P39880 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
CUX1P39880 ZNF890P-202ENST00000530367 1156 ntBASIC28.29■■■□□ 2.12
CUX1P39880 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC28.29■■■□□ 2.12
CUX1P39880 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC28.29■■■□□ 2.12
CUX1P39880 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC28.29■■■□□ 2.12
CUX1P39880 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
CUX1P39880 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC28.29■■■□□ 2.12
CUX1P39880 AC087499.5-201ENST00000452760 1342 ntBASIC28.29■■■□□ 2.12
CUX1P39880 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
CUX1P39880 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
CUX1P39880 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
CUX1P39880 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
CUX1P39880 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
CUX1P39880 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC28.28■■■□□ 2.12
CUX1P39880 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
CUX1P39880 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC28.28■■■□□ 2.12
CUX1P39880 HILS1-202ENST00000545329 423 ntBASIC28.28■■■□□ 2.12
CUX1P39880 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC28.28■■■□□ 2.12
CUX1P39880 AC116353.5-201ENST00000638148 1699 ntBASIC28.28■■■□□ 2.12
CUX1P39880 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC28.28■■■□□ 2.12
CUX1P39880 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC28.28■■■□□ 2.12
CUX1P39880 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
CUX1P39880 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
CUX1P39880 AL354751.1-201ENST00000412768 1863 ntBASIC28.28■■■□□ 2.12
CUX1P39880 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC28.28■■■□□ 2.12
CUX1P39880 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
CUX1P39880 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC28.28■■■□□ 2.12
CUX1P39880 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC28.28■■■□□ 2.12
CUX1P39880 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC28.28■■■□□ 2.12
CUX1P39880 AC104794.3-201ENST00000566840 1248 ntBASIC28.28■■■□□ 2.12
CUX1P39880 SSH2-210ENST00000582084 560 ntTSL 3 BASIC28.28■■■□□ 2.12
CUX1P39880 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC28.28■■■□□ 2.12
CUX1P39880 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
CUX1P39880 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC28.27■■■□□ 2.12
CUX1P39880 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
CUX1P39880 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
CUX1P39880 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC28.27■■■□□ 2.12
CUX1P39880 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
CUX1P39880 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC28.27■■■□□ 2.12
CUX1P39880 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms