Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
RFC4P35249 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
RFC4P35249 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC21.37■■□□□ 1.01
RFC4P35249 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
RFC4P35249 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
RFC4P35249 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
RFC4P35249 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC21.37■■□□□ 1.01
RFC4P35249 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC21.37■■□□□ 1.01
RFC4P35249 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC21.37■■□□□ 1.01
RFC4P35249 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC21.37■■□□□ 1.01
RFC4P35249 MIR3909-201ENST00000579518 119 ntBASIC21.37■■□□□ 1.01
RFC4P35249 AC018529.1-201ENST00000613063 361 ntBASIC21.37■■□□□ 1.01
RFC4P35249 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
RFC4P35249 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
RFC4P35249 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
RFC4P35249 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
RFC4P35249 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
RFC4P35249 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
RFC4P35249 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
RFC4P35249 SLC22A20-204ENST00000530038 1673 ntBASIC21.37■■□□□ 1.01
RFC4P35249 BCL2-203ENST00000589955 5011 ntBASIC21.37■■□□□ 1.01
RFC4P35249 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
RFC4P35249 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
RFC4P35249 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
RFC4P35249 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
RFC4P35249 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
RFC4P35249 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC21.36■■□□□ 1.01
RFC4P35249 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
RFC4P35249 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC21.36■■□□□ 1.01
RFC4P35249 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC21.36■■□□□ 1.01
RFC4P35249 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
RFC4P35249 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC21.36■■□□□ 1.01
RFC4P35249 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
RFC4P35249 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC21.36■■□□□ 1.01
RFC4P35249 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
RFC4P35249 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC21.36■■□□□ 1.01
RFC4P35249 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC21.36■■□□□ 1.01
RFC4P35249 AC003101.2-201ENST00000612557 442 ntBASIC21.36■■□□□ 1.01
RFC4P35249 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC21.36■■□□□ 1.01
RFC4P35249 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
RFC4P35249 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
RFC4P35249 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC21.36■■□□□ 1.01
RFC4P35249 MADD-208ENST00000405573 1823 ntTSL 5 BASIC21.36■■□□□ 1.01
RFC4P35249 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
RFC4P35249 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
RFC4P35249 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC21.36■■□□□ 1.01
RFC4P35249 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
RFC4P35249 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
RFC4P35249 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC21.35■■□□□ 1.01
RFC4P35249 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
RFC4P35249 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
RFC4P35249 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
RFC4P35249 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
RFC4P35249 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
RFC4P35249 HNRNPA3P1-201ENST00000401429 1139 ntBASIC21.35■■□□□ 1.01
RFC4P35249 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC21.35■■□□□ 1.01
RFC4P35249 HNRNPA3P5-201ENST00000455201 833 ntBASIC21.35■■□□□ 1.01
RFC4P35249 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC21.35■■□□□ 1.01
RFC4P35249 NAA50-208ENST00000497255 789 ntTSL 5 BASIC21.35■■□□□ 1.01
RFC4P35249 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
RFC4P35249 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC21.35■■□□□ 1.01
RFC4P35249 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC21.35■■□□□ 1.01
RFC4P35249 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC21.35■■□□□ 1.01
RFC4P35249 MIR6752-201ENST00000618442 71 ntBASIC21.35■■□□□ 1.01
RFC4P35249 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC21.35■■□□□ 1.01
RFC4P35249 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC21.35■■□□□ 1.01
RFC4P35249 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
RFC4P35249 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
RFC4P35249 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
RFC4P35249 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC21.35■■□□□ 1.01
RFC4P35249 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC21.35■■□□□ 1.01
RFC4P35249 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
RFC4P35249 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
RFC4P35249 LINC00304-203ENST00000565008 1864 ntBASIC21.35■■□□□ 1.01
RFC4P35249 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC21.34■■□□□ 1.01
RFC4P35249 NARF-206ENST00000457415 1668 ntTSL 5 BASIC21.34■■□□□ 1.01
RFC4P35249 GRAMD4P3-201ENST00000621665 1669 ntBASIC21.34■■□□□ 1.01
RFC4P35249 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
RFC4P35249 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
RFC4P35249 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
RFC4P35249 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
RFC4P35249 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC21.34■■□□□ 1.01
RFC4P35249 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC21.34■■□□□ 1.01
RFC4P35249 HLA-V-201ENST00000429037 534 ntBASIC21.34■■□□□ 1.01
RFC4P35249 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
RFC4P35249 KRT17P7-201ENST00000451704 1104 ntBASIC21.34■■□□□ 1.01
RFC4P35249 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC21.34■■□□□ 1.01
RFC4P35249 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC21.34■■□□□ 1.01
RFC4P35249 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
RFC4P35249 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC21.34■■□□□ 1.01
RFC4P35249 AC091167.2-201ENST00000579581 588 ntBASIC21.34■■□□□ 1.01
RFC4P35249 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC21.34■■□□□ 1.01
RFC4P35249 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC21.34■■□□□ 1.01
RFC4P35249 SPDYE12P-201ENST00000618416 771 ntBASIC21.34■■□□□ 1.01
RFC4P35249 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
RFC4P35249 AC093503.3-201ENST00000624917 2352 ntBASIC21.34■■□□□ 1.01
RFC4P35249 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
RFC4P35249 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC21.34■■□□□ 1.01
RFC4P35249 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
RFC4P35249 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms