Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL8A1P27658 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL8A1P27658 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL8A1P27658 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL8A1P27658 AL590787.1-201ENST00000568856 1315 ntBASIC14.94□□□□□ -0.02
COL8A1P27658 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL8A1P27658 AC009336.1-201ENST00000608941 1553 ntBASIC14.94□□□□□ -0.02
COL8A1P27658 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC14.94□□□□□ -0.02
COL8A1P27658 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL8A1P27658 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL8A1P27658 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL8A1P27658 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL8A1P27658 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL8A1P27658 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
COL8A1P27658 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL8A1P27658 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
COL8A1P27658 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL8A1P27658 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL8A1P27658 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
COL8A1P27658 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL8A1P27658 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC14.94□□□□□ -0.02
COL8A1P27658 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
COL8A1P27658 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC14.94□□□□□ -0.02
COL8A1P27658 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC14.94□□□□□ -0.02
COL8A1P27658 AC027369.6-201ENST00000525520 931 ntBASIC14.94□□□□□ -0.02
COL8A1P27658 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC14.94□□□□□ -0.02
COL8A1P27658 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
COL8A1P27658 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
COL8A1P27658 CD7-202ENST00000578509 925 ntTSL 3 BASIC14.94□□□□□ -0.02
COL8A1P27658 SSH2-210ENST00000582084 560 ntTSL 3 BASIC14.94□□□□□ -0.02
COL8A1P27658 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL8A1P27658 PC-208ENST00000529047 1607 ntTSL 3 BASIC14.94□□□□□ -0.02
COL8A1P27658 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
COL8A1P27658 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL8A1P27658 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
COL8A1P27658 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL8A1P27658 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL8A1P27658 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
COL8A1P27658 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC14.94□□□□□ -0.02
COL8A1P27658 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC14.94□□□□□ -0.02
COL8A1P27658 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
COL8A1P27658 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL8A1P27658 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC14.94□□□□□ -0.02
COL8A1P27658 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC14.93□□□□□ -0.02
COL8A1P27658 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC14.93□□□□□ -0.02
COL8A1P27658 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
COL8A1P27658 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL8A1P27658 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
COL8A1P27658 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL8A1P27658 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL8A1P27658 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL8A1P27658 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL8A1P27658 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
COL8A1P27658 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
COL8A1P27658 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL8A1P27658 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL8A1P27658 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
COL8A1P27658 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL8A1P27658 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC14.93□□□□□ -0.02
COL8A1P27658 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL8A1P27658 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL8A1P27658 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
COL8A1P27658 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC14.93□□□□□ -0.02
COL8A1P27658 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC14.93□□□□□ -0.02
COL8A1P27658 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC14.93□□□□□ -0.02
COL8A1P27658 CDK4-206ENST00000549606 558 ntTSL 2 BASIC14.93□□□□□ -0.02
COL8A1P27658 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC14.93□□□□□ -0.02
COL8A1P27658 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
COL8A1P27658 NAA38-206ENST00000576384 424 ntTSL 2 BASIC14.93□□□□□ -0.02
COL8A1P27658 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC14.93□□□□□ -0.02
COL8A1P27658 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC14.93□□□□□ -0.02
COL8A1P27658 GPER1-207ENST00000619052 571 ntTSL 2 BASIC14.93□□□□□ -0.02
COL8A1P27658 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL8A1P27658 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL8A1P27658 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL8A1P27658 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
COL8A1P27658 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
COL8A1P27658 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC14.93□□□□□ -0.02
COL8A1P27658 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL8A1P27658 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL8A1P27658 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC14.93□□□□□ -0.02
COL8A1P27658 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
COL8A1P27658 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL8A1P27658 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC14.93□□□□□ -0.02
COL8A1P27658 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC14.93□□□□□ -0.02
COL8A1P27658 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL8A1P27658 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
COL8A1P27658 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC14.92□□□□□ -0.02
COL8A1P27658 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC14.92□□□□□ -0.02
COL8A1P27658 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC14.92□□□□□ -0.02
COL8A1P27658 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC14.92□□□□□ -0.02
COL8A1P27658 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
COL8A1P27658 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL8A1P27658 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC14.92□□□□□ -0.02
COL8A1P27658 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
COL8A1P27658 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
COL8A1P27658 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
COL8A1P27658 TMPRSS11CP-201ENST00000453277 683 ntBASIC14.92□□□□□ -0.02
COL8A1P27658 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC14.92□□□□□ -0.02
COL8A1P27658 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC14.92□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms