Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC14.58□□□□□ -0.08
USF1P22415 RPS15P9-201ENST00000494093 319 ntBASIC14.58□□□□□ -0.08
USF1P22415 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
USF1P22415 IGHV3-52-201ENST00000519770 353 ntBASIC14.58□□□□□ -0.08
USF1P22415 IGHV3-65-201ENST00000523210 341 ntBASIC14.58□□□□□ -0.08
USF1P22415 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC14.58□□□□□ -0.08
USF1P22415 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
USF1P22415 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
USF1P22415 RPS15-207ENST00000591032 550 ntTSL 3 BASIC14.58□□□□□ -0.08
USF1P22415 AL596442.2-201ENST00000610240 980 ntBASIC14.58□□□□□ -0.08
USF1P22415 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
USF1P22415 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC14.58□□□□□ -0.08
USF1P22415 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
USF1P22415 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
USF1P22415 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC14.58□□□□□ -0.08
USF1P22415 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
USF1P22415 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
USF1P22415 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
USF1P22415 GID4-202ENST00000376345 1391 ntTSL 3 BASIC14.58□□□□□ -0.08
USF1P22415 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
USF1P22415 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC14.58□□□□□ -0.08
USF1P22415 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
USF1P22415 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
USF1P22415 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC14.57□□□□□ -0.08
USF1P22415 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC14.57□□□□□ -0.08
USF1P22415 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
USF1P22415 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
USF1P22415 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
USF1P22415 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
USF1P22415 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
USF1P22415 AC148477.5-201ENST00000625164 1645 ntBASIC14.57□□□□□ -0.08
USF1P22415 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
USF1P22415 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
USF1P22415 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
USF1P22415 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
USF1P22415 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC14.57□□□□□ -0.08
USF1P22415 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC14.57□□□□□ -0.08
USF1P22415 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC14.57□□□□□ -0.08
USF1P22415 LBH-203ENST00000404397 543 ntTSL 4 BASIC14.57□□□□□ -0.08
USF1P22415 ATP6V0CP3-201ENST00000417255 467 ntBASIC14.57□□□□□ -0.08
USF1P22415 HMGN1P19-201ENST00000436976 333 ntBASIC14.57□□□□□ -0.08
USF1P22415 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC14.57□□□□□ -0.08
USF1P22415 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC14.57□□□□□ -0.08
USF1P22415 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
USF1P22415 TMED1-207ENST00000591695 809 ntTSL 5 BASIC14.57□□□□□ -0.08
USF1P22415 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC14.57□□□□□ -0.08
USF1P22415 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC14.57□□□□□ -0.08
USF1P22415 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
USF1P22415 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
USF1P22415 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
USF1P22415 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
USF1P22415 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
USF1P22415 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
USF1P22415 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
USF1P22415 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
USF1P22415 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
USF1P22415 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
USF1P22415 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC14.57□□□□□ -0.08
USF1P22415 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
USF1P22415 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
USF1P22415 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
USF1P22415 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
USF1P22415 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
USF1P22415 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
USF1P22415 KRT18P55-202ENST00000578578 1546 ntBASIC14.56□□□□□ -0.08
USF1P22415 BX276092.7-203ENST00000637198 1536 ntBASIC14.56□□□□□ -0.08
USF1P22415 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
USF1P22415 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC14.56□□□□□ -0.08
USF1P22415 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC14.56□□□□□ -0.08
USF1P22415 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC14.56□□□□□ -0.08
USF1P22415 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
USF1P22415 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
USF1P22415 GNE-204ENST00000539208 2190 ntTSL 2 BASIC14.56□□□□□ -0.08
USF1P22415 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
USF1P22415 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
USF1P22415 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
USF1P22415 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC14.56□□□□□ -0.08
USF1P22415 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
USF1P22415 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC14.56□□□□□ -0.08
USF1P22415 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC14.56□□□□□ -0.08
USF1P22415 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
USF1P22415 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC14.56□□□□□ -0.08
USF1P22415 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC14.56□□□□□ -0.08
USF1P22415 STK19B-204ENST00000512515 211 ntBASIC14.56□□□□□ -0.08
USF1P22415 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC14.56□□□□□ -0.08
USF1P22415 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC14.56□□□□□ -0.08
USF1P22415 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
USF1P22415 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC14.56□□□□□ -0.08
USF1P22415 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC14.56□□□□□ -0.08
USF1P22415 AC109462.3-201ENST00000573934 613 ntBASIC14.56□□□□□ -0.08
USF1P22415 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC14.56□□□□□ -0.08
USF1P22415 AC004790.2-201ENST00000623588 572 ntBASIC14.56□□□□□ -0.08
USF1P22415 C20orf181-201ENST00000623918 480 ntBASIC14.56□□□□□ -0.08
USF1P22415 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC14.56□□□□□ -0.08
USF1P22415 KRT18P28-201ENST00000453838 1332 ntBASIC14.56□□□□□ -0.08
USF1P22415 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
USF1P22415 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC14.56□□□□□ -0.08
USF1P22415 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
USF1P22415 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
USF1P22415 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 52.6 ms