Protein–RNA interactions for Protein: P12107

COL11A1, Collagen alpha-1(XI) chain, humanhuman

Predicted RBP Predictions only

Length 1,806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL11A1P12107 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
COL11A1P12107 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
COL11A1P12107 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL11A1P12107 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC19.27■□□□□ 0.68
COL11A1P12107 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
COL11A1P12107 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL11A1P12107 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL11A1P12107 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
COL11A1P12107 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL11A1P12107 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL11A1P12107 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC19.27■□□□□ 0.68
COL11A1P12107 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL11A1P12107 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL11A1P12107 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC19.27■□□□□ 0.68
COL11A1P12107 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC19.27■□□□□ 0.68
COL11A1P12107 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC19.27■□□□□ 0.68
COL11A1P12107 AC105233.2-201ENST00000523697 349 ntBASIC19.27■□□□□ 0.68
COL11A1P12107 AF228730.5-201ENST00000530288 346 ntBASIC19.27■□□□□ 0.68
COL11A1P12107 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC19.27■□□□□ 0.68
COL11A1P12107 HFE2-206ENST00000634927 506 ntTSL 4 BASIC19.27■□□□□ 0.68
COL11A1P12107 NOC2LP2-201ENST00000407594 1944 ntBASIC19.27■□□□□ 0.68
COL11A1P12107 AC068880.1-201ENST00000507289 2297 ntBASIC19.27■□□□□ 0.67
COL11A1P12107 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC19.27■□□□□ 0.67
COL11A1P12107 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.67
COL11A1P12107 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
COL11A1P12107 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
COL11A1P12107 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.67
COL11A1P12107 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC19.27■□□□□ 0.67
COL11A1P12107 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC19.27■□□□□ 0.67
COL11A1P12107 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
COL11A1P12107 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
COL11A1P12107 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
COL11A1P12107 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
COL11A1P12107 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL11A1P12107 SPDYE7P-202ENST00000420373 878 ntBASIC19.26■□□□□ 0.67
COL11A1P12107 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
COL11A1P12107 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC19.26■□□□□ 0.67
COL11A1P12107 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC19.26■□□□□ 0.67
COL11A1P12107 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COL11A1P12107 AC108860.2-201ENST00000562760 2183 ntBASIC19.26■□□□□ 0.67
COL11A1P12107 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL11A1P12107 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
COL11A1P12107 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL11A1P12107 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COL11A1P12107 FO538757.1-201ENST00000623083 1397 ntBASIC19.26■□□□□ 0.67
COL11A1P12107 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC19.26■□□□□ 0.67
COL11A1P12107 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC19.26■□□□□ 0.67
COL11A1P12107 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
COL11A1P12107 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
COL11A1P12107 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL11A1P12107 AL512356.2-201ENST00000546955 174 ntBASIC19.25■□□□□ 0.67
COL11A1P12107 KRT8P23-201ENST00000560090 1207 ntBASIC19.25■□□□□ 0.67
COL11A1P12107 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC19.25■□□□□ 0.67
COL11A1P12107 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC19.25■□□□□ 0.67
COL11A1P12107 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
COL11A1P12107 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
COL11A1P12107 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
COL11A1P12107 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL11A1P12107 RHBDF1P1-201ENST00000427504 1941 ntBASIC19.25■□□□□ 0.67
COL11A1P12107 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL11A1P12107 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL11A1P12107 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL11A1P12107 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC19.25■□□□□ 0.67
COL11A1P12107 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC19.25■□□□□ 0.67
COL11A1P12107 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC19.25■□□□□ 0.67
COL11A1P12107 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL11A1P12107 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
COL11A1P12107 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC19.25■□□□□ 0.67
COL11A1P12107 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC19.25■□□□□ 0.67
COL11A1P12107 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL11A1P12107 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL11A1P12107 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL11A1P12107 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL11A1P12107 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL11A1P12107 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC19.24■□□□□ 0.67
COL11A1P12107 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL11A1P12107 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL11A1P12107 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC19.24■□□□□ 0.67
COL11A1P12107 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL11A1P12107 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC19.24■□□□□ 0.67
COL11A1P12107 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL11A1P12107 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL11A1P12107 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC19.24■□□□□ 0.67
COL11A1P12107 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
COL11A1P12107 AC002472.2-201ENST00000442739 958 ntBASIC19.24■□□□□ 0.67
COL11A1P12107 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC19.24■□□□□ 0.67
COL11A1P12107 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC19.24■□□□□ 0.67
COL11A1P12107 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL11A1P12107 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC19.24■□□□□ 0.67
COL11A1P12107 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC19.24■□□□□ 0.67
COL11A1P12107 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC19.24■□□□□ 0.67
COL11A1P12107 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
COL11A1P12107 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC19.24■□□□□ 0.67
COL11A1P12107 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC19.24■□□□□ 0.67
COL11A1P12107 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC19.24■□□□□ 0.67
COL11A1P12107 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
COL11A1P12107 AL158211.3-201ENST00000607385 239 ntBASIC19.24■□□□□ 0.67
COL11A1P12107 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC19.24■□□□□ 0.67
COL11A1P12107 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL11A1P12107 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 54.8 ms