Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL4A1P02462 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL4A1P02462 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC20.76■□□□□ 0.91
COL4A1P02462 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC20.76■□□□□ 0.91
COL4A1P02462 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC20.76■□□□□ 0.91
COL4A1P02462 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC20.76■□□□□ 0.91
COL4A1P02462 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
COL4A1P02462 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COL4A1P02462 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL4A1P02462 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL4A1P02462 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COL4A1P02462 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL4A1P02462 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
COL4A1P02462 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COL4A1P02462 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COL4A1P02462 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL4A1P02462 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL4A1P02462 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC20.75■□□□□ 0.91
COL4A1P02462 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COL4A1P02462 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC20.75■□□□□ 0.91
COL4A1P02462 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC20.75■□□□□ 0.91
COL4A1P02462 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL4A1P02462 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL4A1P02462 CROCCP2-202ENST00000412962 2773 ntBASIC20.75■□□□□ 0.91
COL4A1P02462 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COL4A1P02462 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COL4A1P02462 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC20.75■□□□□ 0.91
COL4A1P02462 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL4A1P02462 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL4A1P02462 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
COL4A1P02462 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
COL4A1P02462 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL4A1P02462 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL4A1P02462 RAC2-204ENST00000406508 893 ntTSL 5 BASIC20.74■□□□□ 0.91
COL4A1P02462 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC20.74■□□□□ 0.91
COL4A1P02462 TMPRSS11CP-201ENST00000453277 683 ntBASIC20.74■□□□□ 0.91
COL4A1P02462 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC20.74■□□□□ 0.91
COL4A1P02462 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC20.74■□□□□ 0.91
COL4A1P02462 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC20.74■□□□□ 0.91
COL4A1P02462 WT1-AS_2.1-201ENST00000613208 137 ntBASIC20.74■□□□□ 0.91
COL4A1P02462 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
COL4A1P02462 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC20.74■□□□□ 0.91
COL4A1P02462 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC20.74■□□□□ 0.91
COL4A1P02462 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
COL4A1P02462 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL4A1P02462 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC20.74■□□□□ 0.91
COL4A1P02462 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
COL4A1P02462 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC20.74■□□□□ 0.91
COL4A1P02462 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC20.74■□□□□ 0.91
COL4A1P02462 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL4A1P02462 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL4A1P02462 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL4A1P02462 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC20.74■□□□□ 0.91
COL4A1P02462 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC20.74■□□□□ 0.91
COL4A1P02462 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC20.74■□□□□ 0.91
COL4A1P02462 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC20.74■□□□□ 0.91
COL4A1P02462 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL4A1P02462 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL4A1P02462 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL4A1P02462 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC20.73■□□□□ 0.91
COL4A1P02462 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC20.73■□□□□ 0.91
COL4A1P02462 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL4A1P02462 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC20.73■□□□□ 0.91
COL4A1P02462 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC20.73■□□□□ 0.91
COL4A1P02462 AC087641.1-201ENST00000557561 1021 ntBASIC20.73■□□□□ 0.91
COL4A1P02462 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC20.73■□□□□ 0.91
COL4A1P02462 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL4A1P02462 AC008267.7-201ENST00000624570 1194 ntBASIC20.73■□□□□ 0.91
COL4A1P02462 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL4A1P02462 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL4A1P02462 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL4A1P02462 AC007613.1-201ENST00000572811 2597 ntBASIC20.73■□□□□ 0.91
COL4A1P02462 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC20.73■□□□□ 0.91
COL4A1P02462 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL4A1P02462 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL4A1P02462 AC092053.1-201ENST00000605787 1936 ntBASIC20.73■□□□□ 0.91
COL4A1P02462 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL4A1P02462 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL4A1P02462 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC20.73■□□□□ 0.91
COL4A1P02462 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL4A1P02462 MIR346-201ENST00000362234 95 ntBASIC20.73■□□□□ 0.91
COL4A1P02462 TSSK5P-201ENST00000423978 907 ntBASIC20.73■□□□□ 0.91
COL4A1P02462 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC20.73■□□□□ 0.91
COL4A1P02462 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC20.73■□□□□ 0.91
COL4A1P02462 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC20.73■□□□□ 0.91
COL4A1P02462 PRR29-209ENST00000582540 967 ntTSL 2 BASIC20.73■□□□□ 0.91
COL4A1P02462 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL4A1P02462 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL4A1P02462 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
COL4A1P02462 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC20.73■□□□□ 0.91
COL4A1P02462 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL4A1P02462 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL4A1P02462 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
COL4A1P02462 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC20.72■□□□□ 0.91
COL4A1P02462 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL4A1P02462 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL4A1P02462 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC20.72■□□□□ 0.91
COL4A1P02462 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL4A1P02462 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
COL4A1P02462 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms