Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
COL4A3BPQ9Y5P4 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
COL4A3BPQ9Y5P4 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL4A3BPQ9Y5P4 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
COL4A3BPQ9Y5P4 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
COL4A3BPQ9Y5P4 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC19.23■□□□□ 0.67
COL4A3BPQ9Y5P4 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC19.23■□□□□ 0.67
COL4A3BPQ9Y5P4 ETFA-208ENST00000559602 792 ntTSL 3 BASIC19.23■□□□□ 0.67
COL4A3BPQ9Y5P4 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC19.23■□□□□ 0.67
COL4A3BPQ9Y5P4 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC19.23■□□□□ 0.67
COL4A3BPQ9Y5P4 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL4A3BPQ9Y5P4 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL4A3BPQ9Y5P4 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL4A3BPQ9Y5P4 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL4A3BPQ9Y5P4 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
COL4A3BPQ9Y5P4 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC19.23■□□□□ 0.67
COL4A3BPQ9Y5P4 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
COL4A3BPQ9Y5P4 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL4A3BPQ9Y5P4 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
COL4A3BPQ9Y5P4 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC19.23■□□□□ 0.67
COL4A3BPQ9Y5P4 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL4A3BPQ9Y5P4 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COL4A3BPQ9Y5P4 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL4A3BPQ9Y5P4 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL4A3BPQ9Y5P4 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL4A3BPQ9Y5P4 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC19.22■□□□□ 0.67
COL4A3BPQ9Y5P4 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC19.22■□□□□ 0.67
COL4A3BPQ9Y5P4 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COL4A3BPQ9Y5P4 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC19.22■□□□□ 0.67
COL4A3BPQ9Y5P4 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL4A3BPQ9Y5P4 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC19.22■□□□□ 0.67
COL4A3BPQ9Y5P4 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC19.22■□□□□ 0.67
COL4A3BPQ9Y5P4 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL4A3BPQ9Y5P4 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
COL4A3BPQ9Y5P4 AC136632.2-201ENST00000512891 861 ntBASIC19.22■□□□□ 0.67
COL4A3BPQ9Y5P4 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC19.22■□□□□ 0.67
COL4A3BPQ9Y5P4 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COL4A3BPQ9Y5P4 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC19.22■□□□□ 0.67
COL4A3BPQ9Y5P4 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC19.22■□□□□ 0.67
COL4A3BPQ9Y5P4 PIN1-206ENST00000587625 878 ntTSL 2 BASIC19.22■□□□□ 0.67
COL4A3BPQ9Y5P4 Z83851.2-201ENST00000609564 659 ntBASIC19.22■□□□□ 0.67
COL4A3BPQ9Y5P4 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL4A3BPQ9Y5P4 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL4A3BPQ9Y5P4 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC19.22■□□□□ 0.67
COL4A3BPQ9Y5P4 AC097637.2-201ENST00000624096 1997 ntBASIC19.22■□□□□ 0.67
COL4A3BPQ9Y5P4 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL4A3BPQ9Y5P4 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL4A3BPQ9Y5P4 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL4A3BPQ9Y5P4 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL4A3BPQ9Y5P4 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COL4A3BPQ9Y5P4 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC19.22■□□□□ 0.67
COL4A3BPQ9Y5P4 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COL4A3BPQ9Y5P4 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC19.22■□□□□ 0.67
COL4A3BPQ9Y5P4 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC19.21■□□□□ 0.67
COL4A3BPQ9Y5P4 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
COL4A3BPQ9Y5P4 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC19.21■□□□□ 0.67
COL4A3BPQ9Y5P4 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
COL4A3BPQ9Y5P4 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL4A3BPQ9Y5P4 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL4A3BPQ9Y5P4 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL4A3BPQ9Y5P4 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL4A3BPQ9Y5P4 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL4A3BPQ9Y5P4 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC19.21■□□□□ 0.67
COL4A3BPQ9Y5P4 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL4A3BPQ9Y5P4 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC19.21■□□□□ 0.67
COL4A3BPQ9Y5P4 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC19.21■□□□□ 0.67
COL4A3BPQ9Y5P4 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL4A3BPQ9Y5P4 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL4A3BPQ9Y5P4 ELK2BP-201ENST00000415014 1224 ntBASIC19.21■□□□□ 0.67
COL4A3BPQ9Y5P4 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC19.21■□□□□ 0.67
COL4A3BPQ9Y5P4 ARTN-206ENST00000472435 402 ntTSL 3 BASIC19.21■□□□□ 0.67
COL4A3BPQ9Y5P4 KRT18P58-201ENST00000527480 1120 ntBASIC19.21■□□□□ 0.67
COL4A3BPQ9Y5P4 UNC93B6-202ENST00000528242 690 ntBASIC19.21■□□□□ 0.67
COL4A3BPQ9Y5P4 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC19.21■□□□□ 0.67
COL4A3BPQ9Y5P4 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC19.21■□□□□ 0.67
COL4A3BPQ9Y5P4 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC19.21■□□□□ 0.67
COL4A3BPQ9Y5P4 AL139424.1-201ENST00000607572 797 ntBASIC19.21■□□□□ 0.67
COL4A3BPQ9Y5P4 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC19.21■□□□□ 0.67
COL4A3BPQ9Y5P4 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC19.21■□□□□ 0.67
COL4A3BPQ9Y5P4 AC005593.1-201ENST00000624894 515 ntBASIC19.21■□□□□ 0.67
COL4A3BPQ9Y5P4 AC093525.9-201ENST00000624961 1746 ntBASIC19.21■□□□□ 0.67
COL4A3BPQ9Y5P4 PGM5P2-202ENST00000637225 1043 ntBASIC19.21■□□□□ 0.67
COL4A3BPQ9Y5P4 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL4A3BPQ9Y5P4 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL4A3BPQ9Y5P4 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC19.21■□□□□ 0.67
COL4A3BPQ9Y5P4 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
COL4A3BPQ9Y5P4 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC19.21■□□□□ 0.67
COL4A3BPQ9Y5P4 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL4A3BPQ9Y5P4 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL4A3BPQ9Y5P4 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL4A3BPQ9Y5P4 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL4A3BPQ9Y5P4 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC19.21■□□□□ 0.67
COL4A3BPQ9Y5P4 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL4A3BPQ9Y5P4 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL4A3BPQ9Y5P4 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL4A3BPQ9Y5P4 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL4A3BPQ9Y5P4 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL4A3BPQ9Y5P4 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC19.2■□□□□ 0.66
COL4A3BPQ9Y5P4 AC006504.4-201ENST00000592118 1568 ntBASIC19.2■□□□□ 0.66
COL4A3BPQ9Y5P4 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms