Protein–RNA interactions for Protein: Q9NP77

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, humanhuman

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72Q9NP77 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC17.07■□□□□ 0.32
SSU72Q9NP77 LINC00895-201ENST00000629028 1637 ntBASIC17.07■□□□□ 0.32
SSU72Q9NP77 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SSU72Q9NP77 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SSU72Q9NP77 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SSU72Q9NP77 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SSU72Q9NP77 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SSU72Q9NP77 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC17.06■□□□□ 0.32
SSU72Q9NP77 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SSU72Q9NP77 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
SSU72Q9NP77 AC103702.1-201ENST00000548801 2630 ntBASIC17.06■□□□□ 0.32
SSU72Q9NP77 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SSU72Q9NP77 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SSU72Q9NP77 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SSU72Q9NP77 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC17.06■□□□□ 0.32
SSU72Q9NP77 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SSU72Q9NP77 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SSU72Q9NP77 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
SSU72Q9NP77 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC17.06■□□□□ 0.32
SSU72Q9NP77 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SSU72Q9NP77 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC17.06■□□□□ 0.32
SSU72Q9NP77 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SSU72Q9NP77 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC17.06■□□□□ 0.32
SSU72Q9NP77 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
SSU72Q9NP77 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC17.06■□□□□ 0.32
SSU72Q9NP77 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC17.06■□□□□ 0.32
SSU72Q9NP77 AL441883.1-201ENST00000566170 1045 ntBASIC17.06■□□□□ 0.32
SSU72Q9NP77 AC005332.3-201ENST00000589904 676 ntBASIC17.06■□□□□ 0.32
SSU72Q9NP77 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC17.06■□□□□ 0.32
SSU72Q9NP77 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SSU72Q9NP77 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SSU72Q9NP77 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SSU72Q9NP77 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SSU72Q9NP77 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC17.06■□□□□ 0.32
SSU72Q9NP77 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
SSU72Q9NP77 OR6D1P-203ENST00000641209 4860 ntBASIC17.06■□□□□ 0.32
SSU72Q9NP77 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SSU72Q9NP77 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SSU72Q9NP77 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SSU72Q9NP77 AC024909.3-201ENST00000611513 2257 ntBASIC17.05■□□□□ 0.32
SSU72Q9NP77 FUK-207ENST00000571514 3054 ntTSL 2 BASIC17.05■□□□□ 0.32
SSU72Q9NP77 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SSU72Q9NP77 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
SSU72Q9NP77 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SSU72Q9NP77 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
SSU72Q9NP77 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SSU72Q9NP77 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC17.05■□□□□ 0.32
SSU72Q9NP77 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC17.05■□□□□ 0.32
SSU72Q9NP77 KRT18P22-201ENST00000402024 1347 ntBASIC17.05■□□□□ 0.32
SSU72Q9NP77 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
SSU72Q9NP77 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SSU72Q9NP77 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SSU72Q9NP77 CD70-202ENST00000423145 881 ntTSL 2 BASIC17.05■□□□□ 0.32
SSU72Q9NP77 AC092597.1-201ENST00000487352 616 ntBASIC17.05■□□□□ 0.32
SSU72Q9NP77 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
SSU72Q9NP77 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SSU72Q9NP77 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC17.05■□□□□ 0.32
SSU72Q9NP77 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SSU72Q9NP77 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
SSU72Q9NP77 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SSU72Q9NP77 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC17.05■□□□□ 0.32
SSU72Q9NP77 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC17.05■□□□□ 0.32
SSU72Q9NP77 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
SSU72Q9NP77 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
SSU72Q9NP77 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
SSU72Q9NP77 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC17.04■□□□□ 0.32
SSU72Q9NP77 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SSU72Q9NP77 LINC01568-207ENST00000641790 1380 ntBASIC17.04■□□□□ 0.32
SSU72Q9NP77 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
SSU72Q9NP77 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SSU72Q9NP77 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC17.04■□□□□ 0.32
SSU72Q9NP77 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SSU72Q9NP77 MST1L-201ENST00000442552 2185 ntBASIC17.04■□□□□ 0.32
SSU72Q9NP77 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SSU72Q9NP77 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
SSU72Q9NP77 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SSU72Q9NP77 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SSU72Q9NP77 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
SSU72Q9NP77 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SSU72Q9NP77 FAM220CP-201ENST00000395253 831 ntBASIC17.04■□□□□ 0.32
SSU72Q9NP77 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC17.04■□□□□ 0.32
SSU72Q9NP77 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SSU72Q9NP77 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
SSU72Q9NP77 TMA16-209ENST00000513272 803 ntTSL 2 BASIC17.04■□□□□ 0.32
SSU72Q9NP77 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
SSU72Q9NP77 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
SSU72Q9NP77 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC17.04■□□□□ 0.32
SSU72Q9NP77 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC17.04■□□□□ 0.32
SSU72Q9NP77 DUX4L17-201ENST00000557360 1267 ntBASIC17.04■□□□□ 0.32
SSU72Q9NP77 AL138831.2-201ENST00000606564 490 ntBASIC17.04■□□□□ 0.32
SSU72Q9NP77 AL353801.3-201ENST00000609898 542 ntBASIC17.04■□□□□ 0.32
SSU72Q9NP77 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SSU72Q9NP77 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SSU72Q9NP77 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC17.04■□□□□ 0.32
SSU72Q9NP77 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SSU72Q9NP77 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SSU72Q9NP77 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
SSU72Q9NP77 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SSU72Q9NP77 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC17.04■□□□□ 0.32
SSU72Q9NP77 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms