Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 RN7SL606P-201ENST00000472779 293 ntBASIC18.57■□□□□ 0.56
CCDC42Q96M95 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC18.57■□□□□ 0.56
CCDC42Q96M95 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC18.57■□□□□ 0.56
CCDC42Q96M95 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC18.57■□□□□ 0.56
CCDC42Q96M95 AL138831.2-201ENST00000606564 490 ntBASIC18.57■□□□□ 0.56
CCDC42Q96M95 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC18.57■□□□□ 0.56
CCDC42Q96M95 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC18.57■□□□□ 0.56
CCDC42Q96M95 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC42Q96M95 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC42Q96M95 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC42Q96M95 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC18.57■□□□□ 0.56
CCDC42Q96M95 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC42Q96M95 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC42Q96M95 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC18.56■□□□□ 0.56
CCDC42Q96M95 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC42Q96M95 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC18.56■□□□□ 0.56
CCDC42Q96M95 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC42Q96M95 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC42Q96M95 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC18.56■□□□□ 0.56
CCDC42Q96M95 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC18.56■□□□□ 0.56
CCDC42Q96M95 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC42Q96M95 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC18.56■□□□□ 0.56
CCDC42Q96M95 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC42Q96M95 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC42Q96M95 SPDYE13P-201ENST00000445314 798 ntBASIC18.56■□□□□ 0.56
CCDC42Q96M95 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC18.56■□□□□ 0.56
CCDC42Q96M95 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC18.56■□□□□ 0.56
CCDC42Q96M95 AC124864.1-201ENST00000623408 392 ntBASIC18.56■□□□□ 0.56
CCDC42Q96M95 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC18.56■□□□□ 0.56
CCDC42Q96M95 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC42Q96M95 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC42Q96M95 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC42Q96M95 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC18.56■□□□□ 0.56
CCDC42Q96M95 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
CCDC42Q96M95 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC42Q96M95 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC42Q96M95 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC18.56■□□□□ 0.56
CCDC42Q96M95 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
CCDC42Q96M95 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC42Q96M95 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC42Q96M95 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC42Q96M95 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC42Q96M95 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC42Q96M95 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC42Q96M95 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC42Q96M95 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC42Q96M95 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC42Q96M95 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC18.55■□□□□ 0.56
CCDC42Q96M95 AL135999.2-201ENST00000622438 1686 ntBASIC18.55■□□□□ 0.56
CCDC42Q96M95 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC42Q96M95 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC42Q96M95 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC18.55■□□□□ 0.56
CCDC42Q96M95 KRT18P57-201ENST00000443599 1254 ntBASIC18.55■□□□□ 0.56
CCDC42Q96M95 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC42Q96M95 CD320-202ENST00000537716 1119 ntTSL 2 BASIC18.55■□□□□ 0.56
CCDC42Q96M95 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC18.55■□□□□ 0.56
CCDC42Q96M95 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC42Q96M95 AL353801.3-201ENST00000609898 542 ntBASIC18.55■□□□□ 0.56
CCDC42Q96M95 AC006011.2-201ENST00000621313 1158 ntBASIC18.55■□□□□ 0.56
CCDC42Q96M95 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC18.55■□□□□ 0.56
CCDC42Q96M95 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC42Q96M95 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC42Q96M95 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC42Q96M95 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
CCDC42Q96M95 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC42Q96M95 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC42Q96M95 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC42Q96M95 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC42Q96M95 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
CCDC42Q96M95 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC42Q96M95 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC42Q96M95 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC18.55■□□□□ 0.56
CCDC42Q96M95 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC42Q96M95 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC42Q96M95 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC42Q96M95 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC18.54■□□□□ 0.56
CCDC42Q96M95 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC18.54■□□□□ 0.56
CCDC42Q96M95 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC18.54■□□□□ 0.56
CCDC42Q96M95 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC42Q96M95 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC42Q96M95 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC42Q96M95 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC18.54■□□□□ 0.56
CCDC42Q96M95 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC42Q96M95 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC42Q96M95 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC42Q96M95 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC42Q96M95 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC42Q96M95 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC42Q96M95 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC42Q96M95 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC18.54■□□□□ 0.56
CCDC42Q96M95 TSPY22P-201ENST00000427496 604 ntBASIC18.54■□□□□ 0.56
CCDC42Q96M95 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
CCDC42Q96M95 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC18.54■□□□□ 0.56
CCDC42Q96M95 AC011840.4-201ENST00000578471 627 ntBASIC18.54■□□□□ 0.56
CCDC42Q96M95 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC18.54■□□□□ 0.56
CCDC42Q96M95 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC18.54■□□□□ 0.56
CCDC42Q96M95 AL592071.1-201ENST00000611956 408 ntBASIC18.54■□□□□ 0.56
CCDC42Q96M95 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC18.54■□□□□ 0.56
CCDC42Q96M95 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
CCDC42Q96M95 AC073912.3-201ENST00000624414 853 ntBASIC18.54■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms