Protein–RNA interactions for Protein: Q96AA3

RFT1, Protein RFT1 homolog, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFT1Q96AA3 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
RFT1Q96AA3 AC010203.1-204ENST00000548782 407 ntBASIC15.28■□□□□ 0.04
RFT1Q96AA3 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC15.28■□□□□ 0.04
RFT1Q96AA3 AL136038.4-201ENST00000603606 1261 ntBASIC15.28■□□□□ 0.04
RFT1Q96AA3 AC145285.6-201ENST00000604632 637 ntBASIC15.28■□□□□ 0.04
RFT1Q96AA3 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
RFT1Q96AA3 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC15.28■□□□□ 0.04
RFT1Q96AA3 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
RFT1Q96AA3 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
RFT1Q96AA3 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RFT1Q96AA3 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC15.28■□□□□ 0.04
RFT1Q96AA3 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC15.28■□□□□ 0.04
RFT1Q96AA3 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
RFT1Q96AA3 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
RFT1Q96AA3 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RFT1Q96AA3 AC132872.4-202ENST00000622924 2756 ntBASIC15.28■□□□□ 0.04
RFT1Q96AA3 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
RFT1Q96AA3 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC15.28■□□□□ 0.04
RFT1Q96AA3 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC15.28■□□□□ 0.04
RFT1Q96AA3 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC15.27■□□□□ 0.04
RFT1Q96AA3 AC092068.3-201ENST00000587894 2016 ntBASIC15.27■□□□□ 0.04
RFT1Q96AA3 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
RFT1Q96AA3 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
RFT1Q96AA3 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
RFT1Q96AA3 AC079328.2-201ENST00000561241 3354 ntBASIC15.27■□□□□ 0.04
RFT1Q96AA3 AL391807.1-203ENST00000604392 2365 ntBASIC15.27■□□□□ 0.04
RFT1Q96AA3 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC15.27■□□□□ 0.04
RFT1Q96AA3 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
RFT1Q96AA3 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC15.27■□□□□ 0.04
RFT1Q96AA3 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
RFT1Q96AA3 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
RFT1Q96AA3 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
RFT1Q96AA3 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC15.27■□□□□ 0.04
RFT1Q96AA3 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
RFT1Q96AA3 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC15.27■□□□□ 0.04
RFT1Q96AA3 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC15.27■□□□□ 0.04
RFT1Q96AA3 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
RFT1Q96AA3 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
RFT1Q96AA3 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
RFT1Q96AA3 ANKRD20A18P-201ENST00000359341 492 ntBASIC15.27■□□□□ 0.04
RFT1Q96AA3 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC15.27■□□□□ 0.04
RFT1Q96AA3 AC113404.2-201ENST00000507884 177 ntBASIC15.27■□□□□ 0.04
RFT1Q96AA3 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC15.27■□□□□ 0.04
RFT1Q96AA3 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC15.27■□□□□ 0.04
RFT1Q96AA3 AL441883.1-201ENST00000566170 1045 ntBASIC15.27■□□□□ 0.04
RFT1Q96AA3 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
RFT1Q96AA3 AC116353.5-201ENST00000638148 1699 ntBASIC15.27■□□□□ 0.03
RFT1Q96AA3 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC15.27■□□□□ 0.03
RFT1Q96AA3 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
RFT1Q96AA3 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC15.27■□□□□ 0.03
RFT1Q96AA3 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC15.27■□□□□ 0.03
RFT1Q96AA3 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
RFT1Q96AA3 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
RFT1Q96AA3 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC15.27■□□□□ 0.03
RFT1Q96AA3 RHBDF1P1-201ENST00000427504 1941 ntBASIC15.27■□□□□ 0.03
RFT1Q96AA3 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
RFT1Q96AA3 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
RFT1Q96AA3 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC15.27■□□□□ 0.03
RFT1Q96AA3 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC15.26■□□□□ 0.03
RFT1Q96AA3 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC15.26■□□□□ 0.03
RFT1Q96AA3 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
RFT1Q96AA3 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RFT1Q96AA3 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RFT1Q96AA3 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
RFT1Q96AA3 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RFT1Q96AA3 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
RFT1Q96AA3 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC15.26■□□□□ 0.03
RFT1Q96AA3 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RFT1Q96AA3 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
RFT1Q96AA3 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
RFT1Q96AA3 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
RFT1Q96AA3 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC15.26■□□□□ 0.03
RFT1Q96AA3 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
RFT1Q96AA3 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
RFT1Q96AA3 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC15.26■□□□□ 0.03
RFT1Q96AA3 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
RFT1Q96AA3 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC15.26■□□□□ 0.03
RFT1Q96AA3 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
RFT1Q96AA3 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
RFT1Q96AA3 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC15.26■□□□□ 0.03
RFT1Q96AA3 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RFT1Q96AA3 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RFT1Q96AA3 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
RFT1Q96AA3 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC15.26■□□□□ 0.03
RFT1Q96AA3 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC15.26■□□□□ 0.03
RFT1Q96AA3 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC15.26■□□□□ 0.03
RFT1Q96AA3 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC15.26■□□□□ 0.03
RFT1Q96AA3 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC15.26■□□□□ 0.03
RFT1Q96AA3 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
RFT1Q96AA3 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
RFT1Q96AA3 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
RFT1Q96AA3 AC004263.2-201ENST00000617183 678 ntBASIC15.26■□□□□ 0.03
RFT1Q96AA3 AC066615.1-201ENST00000640911 628 ntBASIC15.26■□□□□ 0.03
RFT1Q96AA3 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RFT1Q96AA3 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RFT1Q96AA3 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
RFT1Q96AA3 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RFT1Q96AA3 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
RFT1Q96AA3 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
RFT1Q96AA3 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms