Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 WAC-202ENST00000347934 2839 ntTSL 5 BASIC16.78■□□□□ 0.28
VRK3Q8IV63 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
VRK3Q8IV63 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VRK3Q8IV63 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC16.78■□□□□ 0.28
VRK3Q8IV63 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC16.78■□□□□ 0.28
VRK3Q8IV63 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC16.78■□□□□ 0.28
VRK3Q8IV63 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VRK3Q8IV63 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC16.78■□□□□ 0.28
VRK3Q8IV63 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VRK3Q8IV63 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC16.78■□□□□ 0.28
VRK3Q8IV63 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC16.78■□□□□ 0.28
VRK3Q8IV63 AC105339.3-201ENST00000560043 636 ntBASIC16.78■□□□□ 0.28
VRK3Q8IV63 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC16.78■□□□□ 0.28
VRK3Q8IV63 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VRK3Q8IV63 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC16.78■□□□□ 0.28
VRK3Q8IV63 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VRK3Q8IV63 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
VRK3Q8IV63 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VRK3Q8IV63 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VRK3Q8IV63 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VRK3Q8IV63 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VRK3Q8IV63 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC16.78■□□□□ 0.28
VRK3Q8IV63 NF2-208ENST00000403435 2568 ntTSL 5 BASIC16.78■□□□□ 0.28
VRK3Q8IV63 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC16.78■□□□□ 0.28
VRK3Q8IV63 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
VRK3Q8IV63 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VRK3Q8IV63 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
VRK3Q8IV63 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VRK3Q8IV63 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC16.77■□□□□ 0.28
VRK3Q8IV63 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
VRK3Q8IV63 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
VRK3Q8IV63 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
VRK3Q8IV63 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC16.77■□□□□ 0.28
VRK3Q8IV63 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC16.77■□□□□ 0.28
VRK3Q8IV63 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VRK3Q8IV63 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
VRK3Q8IV63 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VRK3Q8IV63 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
VRK3Q8IV63 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC16.77■□□□□ 0.28
VRK3Q8IV63 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC16.77■□□□□ 0.28
VRK3Q8IV63 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC16.77■□□□□ 0.28
VRK3Q8IV63 AP002414.1-201ENST00000391405 1147 ntBASIC16.77■□□□□ 0.28
VRK3Q8IV63 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC16.77■□□□□ 0.28
VRK3Q8IV63 FDX1P1-201ENST00000449115 551 ntBASIC16.77■□□□□ 0.28
VRK3Q8IV63 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
VRK3Q8IV63 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
VRK3Q8IV63 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VRK3Q8IV63 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC16.77■□□□□ 0.28
VRK3Q8IV63 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC16.77■□□□□ 0.28
VRK3Q8IV63 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC16.77■□□□□ 0.28
VRK3Q8IV63 KLK8-205ENST00000593490 267 ntTSL 3 BASIC16.77■□□□□ 0.28
VRK3Q8IV63 AL356488.2-201ENST00000602755 427 ntBASIC16.77■□□□□ 0.28
VRK3Q8IV63 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
VRK3Q8IV63 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC16.77■□□□□ 0.28
VRK3Q8IV63 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
VRK3Q8IV63 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
VRK3Q8IV63 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VRK3Q8IV63 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC16.77■□□□□ 0.28
VRK3Q8IV63 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
VRK3Q8IV63 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
VRK3Q8IV63 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
VRK3Q8IV63 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
VRK3Q8IV63 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC16.77■□□□□ 0.27
VRK3Q8IV63 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
VRK3Q8IV63 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
VRK3Q8IV63 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC16.77■□□□□ 0.27
VRK3Q8IV63 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC16.77■□□□□ 0.27
VRK3Q8IV63 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
VRK3Q8IV63 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC16.76■□□□□ 0.27
VRK3Q8IV63 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
VRK3Q8IV63 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
VRK3Q8IV63 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
VRK3Q8IV63 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
VRK3Q8IV63 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
VRK3Q8IV63 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VRK3Q8IV63 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC16.76■□□□□ 0.27
VRK3Q8IV63 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
VRK3Q8IV63 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VRK3Q8IV63 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
VRK3Q8IV63 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC16.76■□□□□ 0.27
VRK3Q8IV63 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
VRK3Q8IV63 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VRK3Q8IV63 AC005915.1-201ENST00000624912 2018 ntBASIC16.76■□□□□ 0.27
VRK3Q8IV63 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VRK3Q8IV63 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC16.76■□□□□ 0.27
VRK3Q8IV63 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VRK3Q8IV63 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC16.76■□□□□ 0.27
VRK3Q8IV63 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VRK3Q8IV63 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
VRK3Q8IV63 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VRK3Q8IV63 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VRK3Q8IV63 AC092910.1-201ENST00000482027 1129 ntBASIC16.76■□□□□ 0.27
VRK3Q8IV63 RPS15P9-201ENST00000494093 319 ntBASIC16.76■□□□□ 0.27
VRK3Q8IV63 AC136632.2-201ENST00000512891 861 ntBASIC16.76■□□□□ 0.27
VRK3Q8IV63 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
VRK3Q8IV63 AC124947.2-201ENST00000547118 1133 ntBASIC16.76■□□□□ 0.27
VRK3Q8IV63 DUX4L17-201ENST00000557360 1267 ntBASIC16.76■□□□□ 0.27
VRK3Q8IV63 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC16.76■□□□□ 0.27
VRK3Q8IV63 AP001005.1-201ENST00000571755 1248 ntBASIC16.76■□□□□ 0.27
VRK3Q8IV63 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms