Protein–RNA interactions for Protein: Q5VTR2

RNF20, E3 ubiquitin-protein ligase BRE1A, humanhuman

Predictions only

Length 975 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF20Q5VTR2 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
RNF20Q5VTR2 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
RNF20Q5VTR2 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
RNF20Q5VTR2 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC20.53■□□□□ 0.88
RNF20Q5VTR2 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RNF20Q5VTR2 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC20.53■□□□□ 0.88
RNF20Q5VTR2 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC20.53■□□□□ 0.88
RNF20Q5VTR2 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
RNF20Q5VTR2 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RNF20Q5VTR2 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
RNF20Q5VTR2 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RNF20Q5VTR2 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC20.53■□□□□ 0.88
RNF20Q5VTR2 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
RNF20Q5VTR2 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
RNF20Q5VTR2 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RNF20Q5VTR2 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RNF20Q5VTR2 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RNF20Q5VTR2 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
RNF20Q5VTR2 LINC00982-205ENST00000420957 435 ntBASIC20.52■□□□□ 0.88
RNF20Q5VTR2 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC20.52■□□□□ 0.88
RNF20Q5VTR2 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RNF20Q5VTR2 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC20.52■□□□□ 0.88
RNF20Q5VTR2 AL022326.1-202ENST00000641533 845 ntBASIC20.52■□□□□ 0.88
RNF20Q5VTR2 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RNF20Q5VTR2 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RNF20Q5VTR2 AL356309.3-201ENST00000624132 1934 ntBASIC20.52■□□□□ 0.88
RNF20Q5VTR2 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC20.52■□□□□ 0.88
RNF20Q5VTR2 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
RNF20Q5VTR2 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
RNF20Q5VTR2 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
RNF20Q5VTR2 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
RNF20Q5VTR2 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
RNF20Q5VTR2 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
RNF20Q5VTR2 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC20.51■□□□□ 0.87
RNF20Q5VTR2 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC20.51■□□□□ 0.87
RNF20Q5VTR2 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RNF20Q5VTR2 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC20.51■□□□□ 0.87
RNF20Q5VTR2 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC20.51■□□□□ 0.87
RNF20Q5VTR2 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
RNF20Q5VTR2 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
RNF20Q5VTR2 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RNF20Q5VTR2 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC20.51■□□□□ 0.87
RNF20Q5VTR2 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
RNF20Q5VTR2 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
RNF20Q5VTR2 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RNF20Q5VTR2 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RNF20Q5VTR2 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
RNF20Q5VTR2 SKP2-204ENST00000508514 821 ntTSL 3 BASIC20.51■□□□□ 0.87
RNF20Q5VTR2 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC20.51■□□□□ 0.87
RNF20Q5VTR2 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC20.51■□□□□ 0.87
RNF20Q5VTR2 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
RNF20Q5VTR2 MTDHP3-201ENST00000594186 672 ntBASIC20.51■□□□□ 0.87
RNF20Q5VTR2 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RNF20Q5VTR2 FRMD8P1-201ENST00000440433 1524 ntBASIC20.51■□□□□ 0.87
RNF20Q5VTR2 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC20.51■□□□□ 0.87
RNF20Q5VTR2 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
RNF20Q5VTR2 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
RNF20Q5VTR2 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RNF20Q5VTR2 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC20.51■□□□□ 0.87
RNF20Q5VTR2 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
RNF20Q5VTR2 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RNF20Q5VTR2 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
RNF20Q5VTR2 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
RNF20Q5VTR2 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC20.5■□□□□ 0.87
RNF20Q5VTR2 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
RNF20Q5VTR2 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RNF20Q5VTR2 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RNF20Q5VTR2 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RNF20Q5VTR2 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
RNF20Q5VTR2 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RNF20Q5VTR2 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
RNF20Q5VTR2 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
RNF20Q5VTR2 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RNF20Q5VTR2 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
RNF20Q5VTR2 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC20.5■□□□□ 0.87
RNF20Q5VTR2 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RNF20Q5VTR2 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
RNF20Q5VTR2 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RNF20Q5VTR2 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
RNF20Q5VTR2 DFFB-203ENST00000341385 572 ntTSL 5 BASIC20.5■□□□□ 0.87
RNF20Q5VTR2 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
RNF20Q5VTR2 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
RNF20Q5VTR2 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RNF20Q5VTR2 BX005266.1-201ENST00000473402 457 ntBASIC20.5■□□□□ 0.87
RNF20Q5VTR2 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC20.5■□□□□ 0.87
RNF20Q5VTR2 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC20.5■□□□□ 0.87
RNF20Q5VTR2 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
RNF20Q5VTR2 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC20.5■□□□□ 0.87
RNF20Q5VTR2 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC20.5■□□□□ 0.87
RNF20Q5VTR2 AL355877.3-201ENST00000622820 899 ntBASIC20.5■□□□□ 0.87
RNF20Q5VTR2 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
RNF20Q5VTR2 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RNF20Q5VTR2 NKILA-202ENST00000614771 2598 ntBASIC20.5■□□□□ 0.87
RNF20Q5VTR2 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC20.5■□□□□ 0.87
RNF20Q5VTR2 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC20.5■□□□□ 0.87
RNF20Q5VTR2 AC105020.1-201ENST00000435356 2205 ntBASIC20.5■□□□□ 0.87
RNF20Q5VTR2 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RNF20Q5VTR2 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
RNF20Q5VTR2 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
RNF20Q5VTR2 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms