Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
USP39Q53GS9 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC17.48■□□□□ 0.39
USP39Q53GS9 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
USP39Q53GS9 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
USP39Q53GS9 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
USP39Q53GS9 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
USP39Q53GS9 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
USP39Q53GS9 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
USP39Q53GS9 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
USP39Q53GS9 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
USP39Q53GS9 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
USP39Q53GS9 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
USP39Q53GS9 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC17.47■□□□□ 0.39
USP39Q53GS9 PC-208ENST00000529047 1607 ntTSL 3 BASIC17.47■□□□□ 0.39
USP39Q53GS9 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
USP39Q53GS9 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
USP39Q53GS9 SP100-208ENST00000427101 1922 ntTSL 2 BASIC17.47■□□□□ 0.39
USP39Q53GS9 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
USP39Q53GS9 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
USP39Q53GS9 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
USP39Q53GS9 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
USP39Q53GS9 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
USP39Q53GS9 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
USP39Q53GS9 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
USP39Q53GS9 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
USP39Q53GS9 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC17.47■□□□□ 0.39
USP39Q53GS9 FAM58CP-201ENST00000435741 640 ntBASIC17.47■□□□□ 0.39
USP39Q53GS9 RHOQP3-201ENST00000437982 621 ntBASIC17.47■□□□□ 0.39
USP39Q53GS9 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC17.47■□□□□ 0.39
USP39Q53GS9 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC17.47■□□□□ 0.39
USP39Q53GS9 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
USP39Q53GS9 STK25P1-201ENST00000585406 838 ntBASIC17.47■□□□□ 0.39
USP39Q53GS9 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC17.47■□□□□ 0.39
USP39Q53GS9 AC023141.13-201ENST00000604991 943 ntBASIC17.47■□□□□ 0.39
USP39Q53GS9 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC17.47■□□□□ 0.39
USP39Q53GS9 AC019129.2-201ENST00000609837 1235 ntBASIC17.47■□□□□ 0.39
USP39Q53GS9 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC17.47■□□□□ 0.39
USP39Q53GS9 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
USP39Q53GS9 PC-214ENST00000628663 1470 ntTSL 5 BASIC17.47■□□□□ 0.39
USP39Q53GS9 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
USP39Q53GS9 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
USP39Q53GS9 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC17.47■□□□□ 0.39
USP39Q53GS9 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
USP39Q53GS9 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
USP39Q53GS9 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
USP39Q53GS9 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
USP39Q53GS9 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
USP39Q53GS9 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
USP39Q53GS9 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC17.47■□□□□ 0.39
USP39Q53GS9 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
USP39Q53GS9 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC17.47■□□□□ 0.39
USP39Q53GS9 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
USP39Q53GS9 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC17.47■□□□□ 0.39
USP39Q53GS9 AC025580.3-201ENST00000617932 1424 ntBASIC17.47■□□□□ 0.39
USP39Q53GS9 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
USP39Q53GS9 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
USP39Q53GS9 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
USP39Q53GS9 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
USP39Q53GS9 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
USP39Q53GS9 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
USP39Q53GS9 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
USP39Q53GS9 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
USP39Q53GS9 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC17.46■□□□□ 0.39
USP39Q53GS9 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
USP39Q53GS9 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
USP39Q53GS9 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
USP39Q53GS9 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC17.46■□□□□ 0.39
USP39Q53GS9 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
USP39Q53GS9 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
USP39Q53GS9 TSEN15P1-201ENST00000423257 515 ntBASIC17.46■□□□□ 0.39
USP39Q53GS9 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC17.46■□□□□ 0.39
USP39Q53GS9 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC17.46■□□□□ 0.39
USP39Q53GS9 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC17.46■□□□□ 0.39
USP39Q53GS9 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC17.46■□□□□ 0.39
USP39Q53GS9 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
USP39Q53GS9 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC17.46■□□□□ 0.39
USP39Q53GS9 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC17.46■□□□□ 0.39
USP39Q53GS9 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC17.46■□□□□ 0.39
USP39Q53GS9 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC17.46■□□□□ 0.39
USP39Q53GS9 MNT-208ENST00000575394 606 ntTSL 4 BASIC17.46■□□□□ 0.39
USP39Q53GS9 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
USP39Q53GS9 TK1-204ENST00000590430 683 ntTSL 3 BASIC17.46■□□□□ 0.39
USP39Q53GS9 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
USP39Q53GS9 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC17.46■□□□□ 0.39
USP39Q53GS9 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
USP39Q53GS9 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
USP39Q53GS9 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC17.46■□□□□ 0.39
USP39Q53GS9 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
USP39Q53GS9 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC17.46■□□□□ 0.39
USP39Q53GS9 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
USP39Q53GS9 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC17.46■□□□□ 0.39
USP39Q53GS9 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC17.46■□□□□ 0.39
USP39Q53GS9 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
USP39Q53GS9 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
USP39Q53GS9 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
USP39Q53GS9 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
USP39Q53GS9 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
USP39Q53GS9 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
USP39Q53GS9 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
USP39Q53GS9 BX276092.7-203ENST00000637198 1536 ntBASIC17.46■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms