Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
CCNA1P78396 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCNA1P78396 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CCNA1P78396 WBP2-203ENST00000433525 928 ntTSL 2 BASIC19.43■□□□□ 0.7
CCNA1P78396 PNKD-204ENST00000436005 978 ntTSL 5 BASIC19.43■□□□□ 0.7
CCNA1P78396 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC19.43■□□□□ 0.7
CCNA1P78396 TERF1P3-201ENST00000505638 1227 ntBASIC19.43■□□□□ 0.7
CCNA1P78396 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC19.43■□□□□ 0.7
CCNA1P78396 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC19.43■□□□□ 0.7
CCNA1P78396 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC19.43■□□□□ 0.7
CCNA1P78396 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
CCNA1P78396 RAB34-224ENST00000636513 888 ntTSL 5 BASIC19.43■□□□□ 0.7
CCNA1P78396 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
CCNA1P78396 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
CCNA1P78396 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCNA1P78396 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC19.43■□□□□ 0.7
CCNA1P78396 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC19.43■□□□□ 0.7
CCNA1P78396 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC19.43■□□□□ 0.7
CCNA1P78396 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCNA1P78396 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CCNA1P78396 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCNA1P78396 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCNA1P78396 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCNA1P78396 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCNA1P78396 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCNA1P78396 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
CCNA1P78396 AC004408.2-201ENST00000623613 2777 ntBASIC19.43■□□□□ 0.7
CCNA1P78396 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCNA1P78396 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CCNA1P78396 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCNA1P78396 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCNA1P78396 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCNA1P78396 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC19.42■□□□□ 0.7
CCNA1P78396 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCNA1P78396 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCNA1P78396 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCNA1P78396 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC19.42■□□□□ 0.7
CCNA1P78396 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCNA1P78396 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCNA1P78396 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCNA1P78396 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC19.42■□□□□ 0.7
CCNA1P78396 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCNA1P78396 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCNA1P78396 WRB-204ENST00000398753 699 ntTSL 3 BASIC19.42■□□□□ 0.7
CCNA1P78396 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC19.42■□□□□ 0.7
CCNA1P78396 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC19.42■□□□□ 0.7
CCNA1P78396 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC19.42■□□□□ 0.7
CCNA1P78396 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC19.42■□□□□ 0.7
CCNA1P78396 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC19.42■□□□□ 0.7
CCNA1P78396 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCNA1P78396 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC19.42■□□□□ 0.7
CCNA1P78396 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC19.42■□□□□ 0.7
CCNA1P78396 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCNA1P78396 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC19.42■□□□□ 0.7
CCNA1P78396 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCNA1P78396 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC19.42■□□□□ 0.7
CCNA1P78396 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC19.42■□□□□ 0.7
CCNA1P78396 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC19.42■□□□□ 0.7
CCNA1P78396 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCNA1P78396 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC19.41■□□□□ 0.7
CCNA1P78396 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC19.41■□□□□ 0.7
CCNA1P78396 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
CCNA1P78396 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC19.41■□□□□ 0.7
CCNA1P78396 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC19.41■□□□□ 0.7
CCNA1P78396 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCNA1P78396 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCNA1P78396 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCNA1P78396 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC19.41■□□□□ 0.7
CCNA1P78396 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCNA1P78396 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCNA1P78396 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
CCNA1P78396 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC19.41■□□□□ 0.7
CCNA1P78396 TSPY16P-201ENST00000449843 468 ntBASIC19.41■□□□□ 0.7
CCNA1P78396 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
CCNA1P78396 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
CCNA1P78396 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC19.41■□□□□ 0.7
CCNA1P78396 MTRF1LP2-201ENST00000506027 1122 ntBASIC19.41■□□□□ 0.7
CCNA1P78396 IGHV3-42-201ENST00000520410 361 ntBASIC19.41■□□□□ 0.7
CCNA1P78396 AC087641.1-201ENST00000557561 1021 ntBASIC19.41■□□□□ 0.7
CCNA1P78396 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
CCNA1P78396 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC19.41■□□□□ 0.7
CCNA1P78396 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC19.41■□□□□ 0.7
CCNA1P78396 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
CCNA1P78396 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
CCNA1P78396 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
CCNA1P78396 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC19.41■□□□□ 0.7
CCNA1P78396 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC19.41■□□□□ 0.7
CCNA1P78396 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCNA1P78396 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCNA1P78396 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCNA1P78396 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCNA1P78396 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCNA1P78396 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC19.4■□□□□ 0.7
CCNA1P78396 AC008677.1-201ENST00000519230 1561 ntBASIC19.4■□□□□ 0.7
CCNA1P78396 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC19.4■□□□□ 0.7
CCNA1P78396 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCNA1P78396 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
CCNA1P78396 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC19.4■□□□□ 0.7
CCNA1P78396 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
CCNA1P78396 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms