Protein–RNA interactions for Protein: P62068

USP46, Ubiquitin carboxyl-terminal hydrolase 46, humanhuman

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP46P62068 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
USP46P62068 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
USP46P62068 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
USP46P62068 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
USP46P62068 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
USP46P62068 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
USP46P62068 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC18.06■□□□□ 0.48
USP46P62068 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
USP46P62068 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
USP46P62068 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC18.06■□□□□ 0.48
USP46P62068 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
USP46P62068 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
USP46P62068 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
USP46P62068 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC18.06■□□□□ 0.48
USP46P62068 YBX2P1-201ENST00000394192 760 ntBASIC18.06■□□□□ 0.48
USP46P62068 NABP1-203ENST00000409510 843 ntTSL 5 BASIC18.06■□□□□ 0.48
USP46P62068 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC18.06■□□□□ 0.48
USP46P62068 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
USP46P62068 SERPINA7P1-201ENST00000443077 631 ntBASIC18.06■□□□□ 0.48
USP46P62068 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC18.06■□□□□ 0.48
USP46P62068 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC18.06■□□□□ 0.48
USP46P62068 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
USP46P62068 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC18.06■□□□□ 0.48
USP46P62068 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC18.06■□□□□ 0.48
USP46P62068 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
USP46P62068 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC18.06■□□□□ 0.48
USP46P62068 AC010654.1-201ENST00000615722 808 ntBASIC18.06■□□□□ 0.48
USP46P62068 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
USP46P62068 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
USP46P62068 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC18.06■□□□□ 0.48
USP46P62068 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
USP46P62068 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC18.06■□□□□ 0.48
USP46P62068 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
USP46P62068 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC18.06■□□□□ 0.48
USP46P62068 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC18.06■□□□□ 0.48
USP46P62068 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
USP46P62068 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
USP46P62068 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC18.06■□□□□ 0.48
USP46P62068 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC18.06■□□□□ 0.48
USP46P62068 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
USP46P62068 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
USP46P62068 GNAS-203ENST00000306120 1878 ntBASIC18.05■□□□□ 0.48
USP46P62068 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
USP46P62068 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
USP46P62068 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
USP46P62068 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
USP46P62068 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
USP46P62068 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
USP46P62068 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC18.05■□□□□ 0.48
USP46P62068 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
USP46P62068 PMP22-202ENST00000395936 816 ntTSL 3 BASIC18.05■□□□□ 0.48
USP46P62068 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC18.05■□□□□ 0.48
USP46P62068 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC18.05■□□□□ 0.48
USP46P62068 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC18.05■□□□□ 0.48
USP46P62068 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC18.05■□□□□ 0.48
USP46P62068 CYB561-216ENST00000582297 897 ntTSL 3 BASIC18.05■□□□□ 0.48
USP46P62068 AC010327.4-202ENST00000591484 748 ntBASIC18.05■□□□□ 0.48
USP46P62068 GGTLC5P-201ENST00000617623 998 ntBASIC18.05■□□□□ 0.48
USP46P62068 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
USP46P62068 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC18.05■□□□□ 0.48
USP46P62068 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
USP46P62068 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
USP46P62068 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
USP46P62068 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
USP46P62068 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
USP46P62068 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC18.05■□□□□ 0.48
USP46P62068 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
USP46P62068 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC18.05■□□□□ 0.48
USP46P62068 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
USP46P62068 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
USP46P62068 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC18.04■□□□□ 0.48
USP46P62068 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
USP46P62068 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
USP46P62068 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
USP46P62068 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
USP46P62068 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
USP46P62068 TPR-209ENST00000613151 2478 ntTSL 5 BASIC18.04■□□□□ 0.48
USP46P62068 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC18.04■□□□□ 0.48
USP46P62068 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
USP46P62068 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
USP46P62068 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC18.04■□□□□ 0.48
USP46P62068 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC18.04■□□□□ 0.48
USP46P62068 PAWRP1-201ENST00000451083 565 ntBASIC18.04■□□□□ 0.48
USP46P62068 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC18.04■□□□□ 0.48
USP46P62068 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC18.04■□□□□ 0.48
USP46P62068 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
USP46P62068 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC18.04■□□□□ 0.48
USP46P62068 MAL2-202ENST00000531508 892 ntTSL 3 BASIC18.04■□□□□ 0.48
USP46P62068 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC18.04■□□□□ 0.48
USP46P62068 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC18.04■□□□□ 0.48
USP46P62068 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC18.04■□□□□ 0.48
USP46P62068 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC18.04■□□□□ 0.48
USP46P62068 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC18.04■□□□□ 0.48
USP46P62068 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC18.04■□□□□ 0.48
USP46P62068 AL513190.1-201ENST00000621254 727 ntBASIC18.04■□□□□ 0.48
USP46P62068 AC010507.1-201ENST00000633895 436 ntBASIC18.04■□□□□ 0.48
USP46P62068 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
USP46P62068 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
USP46P62068 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC18.04■□□□□ 0.48
USP46P62068 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 55.4 ms