Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC16.97■□□□□ 0.31
CXCL12P48061 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
CXCL12P48061 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC16.97■□□□□ 0.31
CXCL12P48061 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC16.97■□□□□ 0.31
CXCL12P48061 AC022144.1-201ENST00000602255 1580 ntBASIC16.97■□□□□ 0.31
CXCL12P48061 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CXCL12P48061 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC16.97■□□□□ 0.31
CXCL12P48061 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CXCL12P48061 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CXCL12P48061 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC16.97■□□□□ 0.31
CXCL12P48061 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CXCL12P48061 PODN-203ENST00000395871 2744 ntTSL 5 BASIC16.97■□□□□ 0.31
CXCL12P48061 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
CXCL12P48061 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC16.97■□□□□ 0.31
CXCL12P48061 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CXCL12P48061 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
CXCL12P48061 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CXCL12P48061 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC16.96■□□□□ 0.31
CXCL12P48061 AC020763.4-201ENST00000623414 4170 ntBASIC16.96■□□□□ 0.31
CXCL12P48061 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CXCL12P48061 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
CXCL12P48061 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC16.96■□□□□ 0.31
CXCL12P48061 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC16.96■□□□□ 0.31
CXCL12P48061 TSSK5P-201ENST00000423978 907 ntBASIC16.96■□□□□ 0.31
CXCL12P48061 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC16.96■□□□□ 0.31
CXCL12P48061 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC16.96■□□□□ 0.31
CXCL12P48061 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC16.96■□□□□ 0.31
CXCL12P48061 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC16.96■□□□□ 0.31
CXCL12P48061 AC018529.1-201ENST00000613063 361 ntBASIC16.96■□□□□ 0.31
CXCL12P48061 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CXCL12P48061 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC16.96■□□□□ 0.31
CXCL12P48061 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
CXCL12P48061 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
CXCL12P48061 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
CXCL12P48061 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
CXCL12P48061 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
CXCL12P48061 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC16.96■□□□□ 0.3
CXCL12P48061 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC16.96■□□□□ 0.3
CXCL12P48061 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
CXCL12P48061 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.3
CXCL12P48061 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
CXCL12P48061 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC16.95■□□□□ 0.3
CXCL12P48061 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CXCL12P48061 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CXCL12P48061 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
CXCL12P48061 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
CXCL12P48061 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CXCL12P48061 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
CXCL12P48061 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC16.95■□□□□ 0.3
CXCL12P48061 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CXCL12P48061 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC16.95■□□□□ 0.3
CXCL12P48061 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CXCL12P48061 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CXCL12P48061 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CXCL12P48061 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CXCL12P48061 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC16.95■□□□□ 0.3
CXCL12P48061 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC16.95■□□□□ 0.3
CXCL12P48061 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC16.95■□□□□ 0.3
CXCL12P48061 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC16.95■□□□□ 0.3
CXCL12P48061 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC16.95■□□□□ 0.3
CXCL12P48061 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
CXCL12P48061 MIR3909-201ENST00000579518 119 ntBASIC16.95■□□□□ 0.3
CXCL12P48061 NKG7-205ENST00000600427 520 ntTSL 3 BASIC16.95■□□□□ 0.3
CXCL12P48061 AC003101.2-201ENST00000612557 442 ntBASIC16.95■□□□□ 0.3
CXCL12P48061 SERF2-217ENST00000630046 862 ntTSL 5 BASIC16.95■□□□□ 0.3
CXCL12P48061 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC16.95■□□□□ 0.3
CXCL12P48061 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CXCL12P48061 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CXCL12P48061 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CXCL12P48061 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CXCL12P48061 CU639417.3-201ENST00000624240 1404 ntBASIC16.95■□□□□ 0.3
CXCL12P48061 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
CXCL12P48061 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
CXCL12P48061 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CXCL12P48061 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CXCL12P48061 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC16.94■□□□□ 0.3
CXCL12P48061 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC16.94■□□□□ 0.3
CXCL12P48061 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
CXCL12P48061 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
CXCL12P48061 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC16.94■□□□□ 0.3
CXCL12P48061 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC16.94■□□□□ 0.3
CXCL12P48061 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
CXCL12P48061 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CXCL12P48061 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC16.94■□□□□ 0.3
CXCL12P48061 HNRNPA3P1-201ENST00000401429 1139 ntBASIC16.94■□□□□ 0.3
CXCL12P48061 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC16.94■□□□□ 0.3
CXCL12P48061 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC16.94■□□□□ 0.3
CXCL12P48061 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CXCL12P48061 HNRNPA3P5-201ENST00000455201 833 ntBASIC16.94■□□□□ 0.3
CXCL12P48061 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC16.94■□□□□ 0.3
CXCL12P48061 NAA50-208ENST00000497255 789 ntTSL 5 BASIC16.94■□□□□ 0.3
CXCL12P48061 LY6E-204ENST00000519546 971 ntTSL 2 BASIC16.94■□□□□ 0.3
CXCL12P48061 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC16.94■□□□□ 0.3
CXCL12P48061 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC16.94■□□□□ 0.3
CXCL12P48061 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC16.94■□□□□ 0.3
CXCL12P48061 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC16.94■□□□□ 0.3
CXCL12P48061 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
CXCL12P48061 AP001350.2-201ENST00000625104 1094 ntBASIC16.94■□□□□ 0.3
CXCL12P48061 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC16.94■□□□□ 0.3
CXCL12P48061 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms