Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL9A1P20849 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL9A1P20849 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
COL9A1P20849 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
COL9A1P20849 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL9A1P20849 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC17.55■□□□□ 0.4
COL9A1P20849 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL9A1P20849 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
COL9A1P20849 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC17.55■□□□□ 0.4
COL9A1P20849 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
COL9A1P20849 LDHBP1-201ENST00000455730 1119 ntBASIC17.55■□□□□ 0.4
COL9A1P20849 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
COL9A1P20849 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC17.55■□□□□ 0.4
COL9A1P20849 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC17.55■□□□□ 0.4
COL9A1P20849 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL9A1P20849 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC17.55■□□□□ 0.4
COL9A1P20849 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC17.55■□□□□ 0.4
COL9A1P20849 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL9A1P20849 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC17.55■□□□□ 0.4
COL9A1P20849 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
COL9A1P20849 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC17.55■□□□□ 0.4
COL9A1P20849 BX323043.1-201ENST00000641006 1765 ntBASIC17.55■□□□□ 0.4
COL9A1P20849 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
COL9A1P20849 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL9A1P20849 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
COL9A1P20849 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC17.55■□□□□ 0.4
COL9A1P20849 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC17.55■□□□□ 0.4
COL9A1P20849 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL9A1P20849 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC17.54■□□□□ 0.4
COL9A1P20849 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
COL9A1P20849 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC17.54■□□□□ 0.4
COL9A1P20849 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL9A1P20849 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL9A1P20849 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
COL9A1P20849 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC17.54■□□□□ 0.4
COL9A1P20849 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL9A1P20849 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC17.54■□□□□ 0.4
COL9A1P20849 RNASE10-201ENST00000328444 717 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
COL9A1P20849 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
COL9A1P20849 AC253536.4-201ENST00000440539 267 ntBASIC17.54■□□□□ 0.4
COL9A1P20849 FADS2-212ENST00000522639 360 ntTSL 5 BASIC17.54■□□□□ 0.4
COL9A1P20849 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC17.54■□□□□ 0.4
COL9A1P20849 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC17.54■□□□□ 0.4
COL9A1P20849 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC17.54■□□□□ 0.4
COL9A1P20849 LINC01225-203ENST00000563550 1244 ntBASIC17.54■□□□□ 0.4
COL9A1P20849 FADS2-215ENST00000574708 385 ntTSL 3 BASIC17.54■□□□□ 0.4
COL9A1P20849 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC17.54■□□□□ 0.4
COL9A1P20849 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
COL9A1P20849 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC17.54■□□□□ 0.4
COL9A1P20849 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL9A1P20849 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC17.54■□□□□ 0.4
COL9A1P20849 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL9A1P20849 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC17.54■□□□□ 0.4
COL9A1P20849 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL9A1P20849 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
COL9A1P20849 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC17.54■□□□□ 0.4
COL9A1P20849 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC17.54■□□□□ 0.4
COL9A1P20849 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
COL9A1P20849 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL9A1P20849 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC17.54■□□□□ 0.4
COL9A1P20849 AL138781.2-201ENST00000617896 1843 ntBASIC17.54■□□□□ 0.4
COL9A1P20849 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL9A1P20849 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC17.53■□□□□ 0.4
COL9A1P20849 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL9A1P20849 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL9A1P20849 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL9A1P20849 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
COL9A1P20849 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
COL9A1P20849 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
COL9A1P20849 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
COL9A1P20849 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL9A1P20849 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL9A1P20849 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC17.53■□□□□ 0.4
COL9A1P20849 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC17.53■□□□□ 0.4
COL9A1P20849 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL9A1P20849 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC17.53■□□□□ 0.4
COL9A1P20849 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC17.53■□□□□ 0.4
COL9A1P20849 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC17.53■□□□□ 0.4
COL9A1P20849 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC17.53■□□□□ 0.4
COL9A1P20849 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC17.53■□□□□ 0.4
COL9A1P20849 AC106872.11-201ENST00000605838 421 ntBASIC17.53■□□□□ 0.4
COL9A1P20849 Metazoa_SRP.172-201ENST00000621807 265 ntBASIC17.53■□□□□ 0.4
COL9A1P20849 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL9A1P20849 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
COL9A1P20849 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC17.53■□□□□ 0.4
COL9A1P20849 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL9A1P20849 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
COL9A1P20849 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC17.53■□□□□ 0.4
COL9A1P20849 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
COL9A1P20849 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC17.53■□□□□ 0.4
COL9A1P20849 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
COL9A1P20849 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL9A1P20849 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC17.53■□□□□ 0.4
COL9A1P20849 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL9A1P20849 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL9A1P20849 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL9A1P20849 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
COL9A1P20849 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL9A1P20849 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL9A1P20849 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms