Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC10.56□□□□□ -0.72
APOBP04114 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
APOBP04114 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
APOBP04114 HLA-DQB1-201ENST00000374943 1656 ntBASIC10.56□□□□□ -0.72
APOBP04114 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC10.56□□□□□ -0.72
APOBP04114 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC10.56□□□□□ -0.72
APOBP04114 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC10.56□□□□□ -0.72
APOBP04114 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC10.56□□□□□ -0.72
APOBP04114 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC10.56□□□□□ -0.72
APOBP04114 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC10.56□□□□□ -0.72
APOBP04114 AL583810.1-201ENST00000553344 1045 ntBASIC10.56□□□□□ -0.72
APOBP04114 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC10.56□□□□□ -0.72
APOBP04114 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC10.56□□□□□ -0.72
APOBP04114 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC10.56□□□□□ -0.72
APOBP04114 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
APOBP04114 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
APOBP04114 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC10.55□□□□□ -0.72
APOBP04114 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC10.55□□□□□ -0.72
APOBP04114 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC10.55□□□□□ -0.72
APOBP04114 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC10.55□□□□□ -0.72
APOBP04114 KRT223P-202ENST00000449164 1292 ntBASIC10.55□□□□□ -0.72
APOBP04114 AC135586.1-201ENST00000539323 574 ntBASIC10.55□□□□□ -0.72
APOBP04114 AL079307.3-201ENST00000556114 283 ntBASIC10.55□□□□□ -0.72
APOBP04114 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC10.55□□□□□ -0.72
APOBP04114 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
APOBP04114 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
APOBP04114 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
APOBP04114 SLC7A15P-201ENST00000424028 1363 ntBASIC10.55□□□□□ -0.72
APOBP04114 SPDYE19P-201ENST00000338590 713 ntBASIC10.55□□□□□ -0.72
APOBP04114 RNU1-129P-201ENST00000384064 167 ntBASIC10.55□□□□□ -0.72
APOBP04114 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC10.55□□□□□ -0.72
APOBP04114 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC10.55□□□□□ -0.72
APOBP04114 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC10.55□□□□□ -0.72
APOBP04114 U1.21-201ENST00000580816 167 ntBASIC10.55□□□□□ -0.72
APOBP04114 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
APOBP04114 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC10.55□□□□□ -0.72
APOBP04114 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
APOBP04114 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
APOBP04114 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC10.55□□□□□ -0.72
APOBP04114 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC10.55□□□□□ -0.72
APOBP04114 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC10.55□□□□□ -0.72
APOBP04114 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
APOBP04114 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
APOBP04114 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC10.55□□□□□ -0.72
APOBP04114 AL391825.1-201ENST00000457671 1364 ntBASIC10.55□□□□□ -0.72
APOBP04114 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
APOBP04114 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC10.55□□□□□ -0.72
APOBP04114 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC10.55□□□□□ -0.72
APOBP04114 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
APOBP04114 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC10.55□□□□□ -0.72
APOBP04114 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
APOBP04114 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC10.55□□□□□ -0.72
APOBP04114 POR-209ENST00000439269 1858 ntTSL 2 BASIC10.55□□□□□ -0.72
APOBP04114 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
APOBP04114 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC10.55□□□□□ -0.72
APOBP04114 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC10.55□□□□□ -0.72
APOBP04114 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC10.55□□□□□ -0.72
APOBP04114 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC10.55□□□□□ -0.72
APOBP04114 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC10.55□□□□□ -0.72
APOBP04114 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
APOBP04114 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC10.55□□□□□ -0.72
APOBP04114 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
APOBP04114 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
APOBP04114 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC10.55□□□□□ -0.72
APOBP04114 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
APOBP04114 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC10.55□□□□□ -0.72
APOBP04114 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
APOBP04114 BCYRN1-201ENST00000418539 200 ntBASIC10.55□□□□□ -0.72
APOBP04114 USP32P1-208ENST00000506594 1164 ntBASIC10.55□□□□□ -0.72
APOBP04114 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC10.55□□□□□ -0.72
APOBP04114 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC10.55□□□□□ -0.72
APOBP04114 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC10.55□□□□□ -0.72
APOBP04114 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC10.54□□□□□ -0.72
APOBP04114 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC10.54□□□□□ -0.72
APOBP04114 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC10.54□□□□□ -0.72
APOBP04114 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
APOBP04114 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
APOBP04114 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC10.54□□□□□ -0.72
APOBP04114 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC10.54□□□□□ -0.72
APOBP04114 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
APOBP04114 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
APOBP04114 MIR6869-201ENST00000619434 62 ntBASIC10.54□□□□□ -0.72
APOBP04114 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
APOBP04114 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC10.54□□□□□ -0.72
APOBP04114 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC10.54□□□□□ -0.72
APOBP04114 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC10.54□□□□□ -0.72
APOBP04114 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
APOBP04114 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC10.54□□□□□ -0.72
APOBP04114 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC10.54□□□□□ -0.72
APOBP04114 WIZP1-201ENST00000531444 2299 ntBASIC10.54□□□□□ -0.72
APOBP04114 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
APOBP04114 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
APOBP04114 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
APOBP04114 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC10.54□□□□□ -0.72
APOBP04114 USB1-202ENST00000423271 1217 ntTSL 2 BASIC10.54□□□□□ -0.72
APOBP04114 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC10.54□□□□□ -0.72
APOBP04114 MYCLP2-201ENST00000449268 967 ntBASIC10.54□□□□□ -0.72
APOBP04114 AC099548.2-209ENST00000480264 625 ntBASIC10.54□□□□□ -0.72
APOBP04114 DOC2GP-202ENST00000514950 1163 ntBASIC10.54□□□□□ -0.72
APOBP04114 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC10.54□□□□□ -0.72
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms