Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TNFP01375 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TNFP01375 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TNFP01375 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
TNFP01375 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TNFP01375 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TNFP01375 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC16.73■□□□□ 0.27
TNFP01375 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC16.73■□□□□ 0.27
TNFP01375 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC16.73■□□□□ 0.27
TNFP01375 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
TNFP01375 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TNFP01375 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC16.73■□□□□ 0.27
TNFP01375 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
TNFP01375 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
TNFP01375 AL031432.2-201ENST00000566714 459 ntBASIC16.73■□□□□ 0.27
TNFP01375 AL928711.1-201ENST00000570165 459 ntBASIC16.73■□□□□ 0.27
TNFP01375 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
TNFP01375 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
TNFP01375 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC16.73■□□□□ 0.27
TNFP01375 AC091812.2-201ENST00000619081 385 ntBASIC16.73■□□□□ 0.27
TNFP01375 AL645728.2-201ENST00000641974 660 ntBASIC16.73■□□□□ 0.27
TNFP01375 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC16.73■□□□□ 0.27
TNFP01375 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
TNFP01375 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TNFP01375 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
TNFP01375 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
TNFP01375 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TNFP01375 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TNFP01375 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
TNFP01375 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
TNFP01375 CD276-203ENST00000537340 2439 ntTSL 2 BASIC16.72■□□□□ 0.27
TNFP01375 AL138688.1-201ENST00000624851 1594 ntBASIC16.72■□□□□ 0.27
TNFP01375 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC16.72■□□□□ 0.27
TNFP01375 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
TNFP01375 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
TNFP01375 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
TNFP01375 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TNFP01375 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC16.72■□□□□ 0.27
TNFP01375 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TNFP01375 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TNFP01375 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TNFP01375 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC16.72■□□□□ 0.27
TNFP01375 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TNFP01375 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TNFP01375 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TNFP01375 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TNFP01375 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
TNFP01375 FALEC-201ENST00000416894 566 ntTSL 3 BASIC16.72■□□□□ 0.27
TNFP01375 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC16.72■□□□□ 0.27
TNFP01375 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC16.72■□□□□ 0.27
TNFP01375 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TNFP01375 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC16.72■□□□□ 0.27
TNFP01375 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TNFP01375 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
TNFP01375 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
TNFP01375 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC16.72■□□□□ 0.27
TNFP01375 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC16.72■□□□□ 0.27
TNFP01375 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC16.72■□□□□ 0.27
TNFP01375 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
TNFP01375 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TNFP01375 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC16.72■□□□□ 0.27
TNFP01375 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
TNFP01375 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
TNFP01375 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TNFP01375 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TNFP01375 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC16.72■□□□□ 0.27
TNFP01375 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TNFP01375 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
TNFP01375 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TNFP01375 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC16.71■□□□□ 0.27
TNFP01375 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
TNFP01375 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TNFP01375 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TNFP01375 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC16.71■□□□□ 0.27
TNFP01375 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC16.71■□□□□ 0.27
TNFP01375 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC16.71■□□□□ 0.27
TNFP01375 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TNFP01375 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TNFP01375 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TNFP01375 GGCT-205ENST00000409436 954 ntTSL 3 BASIC16.71■□□□□ 0.27
TNFP01375 CNN2P11-201ENST00000429351 262 ntBASIC16.71■□□□□ 0.27
TNFP01375 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC16.71■□□□□ 0.27
TNFP01375 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC16.71■□□□□ 0.27
TNFP01375 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TNFP01375 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TNFP01375 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
TNFP01375 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TNFP01375 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC16.71■□□□□ 0.27
TNFP01375 AC112191.1-201ENST00000523689 701 ntBASIC16.71■□□□□ 0.27
TNFP01375 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC16.71■□□□□ 0.27
TNFP01375 AC107918.2-201ENST00000530817 355 ntBASIC16.71■□□□□ 0.27
TNFP01375 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC16.71■□□□□ 0.27
TNFP01375 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC16.71■□□□□ 0.27
TNFP01375 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC16.71■□□□□ 0.27
TNFP01375 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
TNFP01375 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TNFP01375 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TNFP01375 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TNFP01375 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TNFP01375 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms