Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC20■□□□□ 0.79
CDKL5O76039 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC19.99■□□□□ 0.79
CDKL5O76039 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC19.99■□□□□ 0.79
CDKL5O76039 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CDKL5O76039 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CDKL5O76039 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
CDKL5O76039 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CDKL5O76039 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CDKL5O76039 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CDKL5O76039 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CDKL5O76039 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
CDKL5O76039 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CDKL5O76039 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
CDKL5O76039 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
CDKL5O76039 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC19.99■□□□□ 0.79
CDKL5O76039 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC19.99■□□□□ 0.79
CDKL5O76039 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC19.99■□□□□ 0.79
CDKL5O76039 AL589182.2-201ENST00000619332 1049 ntBASIC19.99■□□□□ 0.79
CDKL5O76039 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
CDKL5O76039 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
CDKL5O76039 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC19.99■□□□□ 0.79
CDKL5O76039 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC19.99■□□□□ 0.79
CDKL5O76039 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC19.99■□□□□ 0.79
CDKL5O76039 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC19.99■□□□□ 0.79
CDKL5O76039 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC19.99■□□□□ 0.79
CDKL5O76039 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC19.99■□□□□ 0.79
CDKL5O76039 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
CDKL5O76039 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CDKL5O76039 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CDKL5O76039 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CDKL5O76039 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
CDKL5O76039 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CDKL5O76039 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
CDKL5O76039 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CDKL5O76039 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC19.98■□□□□ 0.79
CDKL5O76039 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CDKL5O76039 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CDKL5O76039 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CDKL5O76039 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CDKL5O76039 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CDKL5O76039 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CDKL5O76039 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC19.98■□□□□ 0.79
CDKL5O76039 NABP1-203ENST00000409510 843 ntTSL 5 BASIC19.98■□□□□ 0.79
CDKL5O76039 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC19.98■□□□□ 0.79
CDKL5O76039 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CDKL5O76039 MSRA-206ENST00000521209 814 ntTSL 3 BASIC19.98■□□□□ 0.79
CDKL5O76039 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CDKL5O76039 AL353135.1-201ENST00000606729 504 ntBASIC19.98■□□□□ 0.79
CDKL5O76039 IFNL4P1-201ENST00000607083 540 ntBASIC19.98■□□□□ 0.79
CDKL5O76039 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
CDKL5O76039 AC012313.10-201ENST00000623509 926 ntBASIC19.98■□□□□ 0.79
CDKL5O76039 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CDKL5O76039 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
CDKL5O76039 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC19.98■□□□□ 0.79
CDKL5O76039 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
CDKL5O76039 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CDKL5O76039 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CDKL5O76039 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CDKL5O76039 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
CDKL5O76039 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC19.97■□□□□ 0.79
CDKL5O76039 PCDHA12-202ENST00000613593 2588 ntBASIC19.97■□□□□ 0.79
CDKL5O76039 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CDKL5O76039 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CDKL5O76039 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CDKL5O76039 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CDKL5O76039 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CDKL5O76039 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CDKL5O76039 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC19.97■□□□□ 0.79
CDKL5O76039 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC19.97■□□□□ 0.79
CDKL5O76039 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
CDKL5O76039 AKR1C7P-201ENST00000305623 895 ntBASIC19.97■□□□□ 0.79
CDKL5O76039 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
CDKL5O76039 IPPK-202ENST00000375522 882 ntTSL 3 BASIC19.97■□□□□ 0.79
CDKL5O76039 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC19.97■□□□□ 0.79
CDKL5O76039 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC19.97■□□□□ 0.79
CDKL5O76039 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC19.97■□□□□ 0.79
CDKL5O76039 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC19.97■□□□□ 0.79
CDKL5O76039 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CDKL5O76039 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
CDKL5O76039 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CDKL5O76039 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC19.97■□□□□ 0.79
CDKL5O76039 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CDKL5O76039 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC19.97■□□□□ 0.79
CDKL5O76039 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
CDKL5O76039 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC19.97■□□□□ 0.79
CDKL5O76039 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
CDKL5O76039 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CDKL5O76039 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC19.96■□□□□ 0.79
CDKL5O76039 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC19.96■□□□□ 0.79
CDKL5O76039 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
CDKL5O76039 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
CDKL5O76039 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC19.96■□□□□ 0.79
CDKL5O76039 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CDKL5O76039 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC19.96■□□□□ 0.79
CDKL5O76039 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
CDKL5O76039 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CDKL5O76039 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC19.96■□□□□ 0.79
CDKL5O76039 SART3-203ENST00000546611 1184 ntBASIC19.96■□□□□ 0.79
CDKL5O76039 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC19.96■□□□□ 0.79
CDKL5O76039 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms