Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SDC3O75056 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SDC3O75056 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
SDC3O75056 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
SDC3O75056 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SDC3O75056 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
SDC3O75056 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
SDC3O75056 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC16.77■□□□□ 0.28
SDC3O75056 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SDC3O75056 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SDC3O75056 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
SDC3O75056 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC16.77■□□□□ 0.28
SDC3O75056 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
SDC3O75056 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
SDC3O75056 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC16.77■□□□□ 0.28
SDC3O75056 NMU-203ENST00000507338 658 ntTSL 3 BASIC16.77■□□□□ 0.28
SDC3O75056 AC112191.1-201ENST00000523689 701 ntBASIC16.77■□□□□ 0.28
SDC3O75056 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC16.77■□□□□ 0.28
SDC3O75056 RNF34-208ENST00000555076 593 ntTSL 3 BASIC16.77■□□□□ 0.28
SDC3O75056 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
SDC3O75056 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
SDC3O75056 AC093512.1-201ENST00000617969 520 ntBASIC16.77■□□□□ 0.28
SDC3O75056 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC16.77■□□□□ 0.28
SDC3O75056 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
SDC3O75056 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
SDC3O75056 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC16.77■□□□□ 0.27
SDC3O75056 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
SDC3O75056 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
SDC3O75056 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
SDC3O75056 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC16.77■□□□□ 0.27
SDC3O75056 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
SDC3O75056 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
SDC3O75056 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.27
SDC3O75056 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC16.77■□□□□ 0.27
SDC3O75056 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC16.77■□□□□ 0.27
SDC3O75056 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC16.76■□□□□ 0.27
SDC3O75056 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SDC3O75056 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC16.76■□□□□ 0.27
SDC3O75056 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SDC3O75056 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC16.76■□□□□ 0.27
SDC3O75056 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SDC3O75056 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SDC3O75056 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SDC3O75056 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC16.76■□□□□ 0.27
SDC3O75056 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC16.76■□□□□ 0.27
SDC3O75056 FALEC-201ENST00000416894 566 ntTSL 3 BASIC16.76■□□□□ 0.27
SDC3O75056 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC16.76■□□□□ 0.27
SDC3O75056 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SDC3O75056 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC16.76■□□□□ 0.27
SDC3O75056 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SDC3O75056 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC16.76■□□□□ 0.27
SDC3O75056 DAD1-205ENST00000543337 501 ntTSL 3 BASIC16.76■□□□□ 0.27
SDC3O75056 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
SDC3O75056 MIR3197-201ENST00000582241 73 ntBASIC16.76■□□□□ 0.27
SDC3O75056 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC16.76■□□□□ 0.27
SDC3O75056 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC16.76■□□□□ 0.27
SDC3O75056 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SDC3O75056 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SDC3O75056 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SDC3O75056 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC16.76■□□□□ 0.27
SDC3O75056 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC16.76■□□□□ 0.27
SDC3O75056 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC16.76■□□□□ 0.27
SDC3O75056 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC16.76■□□□□ 0.27
SDC3O75056 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC16.76■□□□□ 0.27
SDC3O75056 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC16.76■□□□□ 0.27
SDC3O75056 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
SDC3O75056 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
SDC3O75056 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
SDC3O75056 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC16.76■□□□□ 0.27
SDC3O75056 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SDC3O75056 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SDC3O75056 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SDC3O75056 CD276-201ENST00000318424 2738 ntTSL 5 BASIC16.76■□□□□ 0.27
SDC3O75056 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SDC3O75056 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SDC3O75056 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SDC3O75056 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
SDC3O75056 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
SDC3O75056 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
SDC3O75056 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC16.75■□□□□ 0.27
SDC3O75056 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC16.75■□□□□ 0.27
SDC3O75056 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
SDC3O75056 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
SDC3O75056 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SDC3O75056 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SDC3O75056 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SDC3O75056 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SDC3O75056 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SDC3O75056 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC16.75■□□□□ 0.27
SDC3O75056 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC16.75■□□□□ 0.27
SDC3O75056 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC16.75■□□□□ 0.27
SDC3O75056 IGHV3OR16-6-201ENST00000568775 360 ntBASIC16.75■□□□□ 0.27
SDC3O75056 AC011467.4-201ENST00000594891 528 ntBASIC16.75■□□□□ 0.27
SDC3O75056 AC092364.2-202ENST00000597012 1073 ntBASIC16.75■□□□□ 0.27
SDC3O75056 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
SDC3O75056 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC16.75■□□□□ 0.27
SDC3O75056 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SDC3O75056 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
SDC3O75056 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC16.75■□□□□ 0.27
SDC3O75056 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC16.75■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms