Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TCRBV7S3A2A0A539 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC17.48■□□□□ 0.39
TCRBV7S3A2A0A539 DOC2GP-204ENST00000639052 2548 ntBASIC17.48■□□□□ 0.39
TCRBV7S3A2A0A539 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
TCRBV7S3A2A0A539 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
TCRBV7S3A2A0A539 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC17.48■□□□□ 0.39
TCRBV7S3A2A0A539 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
TCRBV7S3A2A0A539 FUOM-202ENST00000368551 628 ntTSL 3 BASIC17.48■□□□□ 0.39
TCRBV7S3A2A0A539 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TCRBV7S3A2A0A539 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC17.48■□□□□ 0.39
TCRBV7S3A2A0A539 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC17.48■□□□□ 0.39
TCRBV7S3A2A0A539 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TCRBV7S3A2A0A539 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC17.48■□□□□ 0.39
TCRBV7S3A2A0A539 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC17.48■□□□□ 0.39
TCRBV7S3A2A0A539 AC087388.1-201ENST00000571370 1112 ntBASIC17.48■□□□□ 0.39
TCRBV7S3A2A0A539 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
TCRBV7S3A2A0A539 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC17.48■□□□□ 0.39
TCRBV7S3A2A0A539 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC17.48■□□□□ 0.39
TCRBV7S3A2A0A539 AP000867.4-201ENST00000641616 219 ntBASIC17.48■□□□□ 0.39
TCRBV7S3A2A0A539 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
TCRBV7S3A2A0A539 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC17.48■□□□□ 0.39
TCRBV7S3A2A0A539 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
TCRBV7S3A2A0A539 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC17.48■□□□□ 0.39
TCRBV7S3A2A0A539 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
TCRBV7S3A2A0A539 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC17.48■□□□□ 0.39
TCRBV7S3A2A0A539 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
TCRBV7S3A2A0A539 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TCRBV7S3A2A0A539 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
TCRBV7S3A2A0A539 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TCRBV7S3A2A0A539 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TCRBV7S3A2A0A539 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC17.48■□□□□ 0.39
TCRBV7S3A2A0A539 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC17.47■□□□□ 0.39
TCRBV7S3A2A0A539 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC17.47■□□□□ 0.39
TCRBV7S3A2A0A539 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC17.47■□□□□ 0.39
TCRBV7S3A2A0A539 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
TCRBV7S3A2A0A539 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
TCRBV7S3A2A0A539 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
TCRBV7S3A2A0A539 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
TCRBV7S3A2A0A539 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TCRBV7S3A2A0A539 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC17.47■□□□□ 0.39
TCRBV7S3A2A0A539 AC004817.3-201ENST00000602957 2129 ntBASIC17.47■□□□□ 0.39
TCRBV7S3A2A0A539 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC17.47■□□□□ 0.39
TCRBV7S3A2A0A539 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC17.47■□□□□ 0.39
TCRBV7S3A2A0A539 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC17.47■□□□□ 0.39
TCRBV7S3A2A0A539 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC17.47■□□□□ 0.39
TCRBV7S3A2A0A539 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC17.47■□□□□ 0.39
TCRBV7S3A2A0A539 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC17.47■□□□□ 0.39
TCRBV7S3A2A0A539 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC17.47■□□□□ 0.39
TCRBV7S3A2A0A539 FAM210CP-201ENST00000445714 574 ntBASIC17.47■□□□□ 0.39
TCRBV7S3A2A0A539 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
TCRBV7S3A2A0A539 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC17.47■□□□□ 0.39
TCRBV7S3A2A0A539 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC17.47■□□□□ 0.39
TCRBV7S3A2A0A539 AC074051.2-201ENST00000565115 352 ntBASIC17.47■□□□□ 0.39
TCRBV7S3A2A0A539 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC17.47■□□□□ 0.39
TCRBV7S3A2A0A539 IL11-204ENST00000590625 1028 ntTSL 2 BASIC17.47■□□□□ 0.39
TCRBV7S3A2A0A539 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC17.47■□□□□ 0.39
TCRBV7S3A2A0A539 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC17.47■□□□□ 0.39
TCRBV7S3A2A0A539 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
TCRBV7S3A2A0A539 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TCRBV7S3A2A0A539 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
TCRBV7S3A2A0A539 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC17.47■□□□□ 0.39
TCRBV7S3A2A0A539 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC17.47■□□□□ 0.39
TCRBV7S3A2A0A539 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC17.47■□□□□ 0.39
TCRBV7S3A2A0A539 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC17.47■□□□□ 0.39
TCRBV7S3A2A0A539 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC17.47■□□□□ 0.39
TCRBV7S3A2A0A539 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC17.47■□□□□ 0.39
TCRBV7S3A2A0A539 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
TCRBV7S3A2A0A539 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TCRBV7S3A2A0A539 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TCRBV7S3A2A0A539 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
TCRBV7S3A2A0A539 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
TCRBV7S3A2A0A539 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
TCRBV7S3A2A0A539 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TCRBV7S3A2A0A539 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TCRBV7S3A2A0A539 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
TCRBV7S3A2A0A539 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
TCRBV7S3A2A0A539 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TCRBV7S3A2A0A539 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC17.46■□□□□ 0.39
TCRBV7S3A2A0A539 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
TCRBV7S3A2A0A539 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC17.46■□□□□ 0.39
TCRBV7S3A2A0A539 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC17.46■□□□□ 0.39
TCRBV7S3A2A0A539 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC17.46■□□□□ 0.39
TCRBV7S3A2A0A539 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC17.46■□□□□ 0.39
TCRBV7S3A2A0A539 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC17.46■□□□□ 0.39
TCRBV7S3A2A0A539 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC17.46■□□□□ 0.39
TCRBV7S3A2A0A539 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC17.46■□□□□ 0.39
TCRBV7S3A2A0A539 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC17.46■□□□□ 0.39
TCRBV7S3A2A0A539 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
TCRBV7S3A2A0A539 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC17.46■□□□□ 0.39
TCRBV7S3A2A0A539 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TCRBV7S3A2A0A539 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TCRBV7S3A2A0A539 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
TCRBV7S3A2A0A539 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC17.46■□□□□ 0.39
TCRBV7S3A2A0A539 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TCRBV7S3A2A0A539 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TCRBV7S3A2A0A539 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
TCRBV7S3A2A0A539 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
TCRBV7S3A2A0A539 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
TCRBV7S3A2A0A539 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.38
TCRBV7S3A2A0A539 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms